Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Enable kvikio GDSStore in cli #70

Open
thewtex opened this issue Mar 4, 2024 · 1 comment
Open

Enable kvikio GDSStore in cli #70

thewtex opened this issue Mar 4, 2024 · 1 comment

Comments

@thewtex
Copy link
Owner

thewtex commented Mar 4, 2024

Provide as a option to enable in the cli.

See test/test_to_ngff_zarr_kvikio.py.

More interesting once the serialized result is compatible with other zarr implementations.

In the kvikio zarr notebook, it mentions:

Some algorithms, such as LZ4, can be used interchangeably on CPU and GPU but Zarr will always use the compressor used to write the Zarr file. We are working with the Zarr team to fix this shortcoming but for now, we will use a workaround where we patch the metadata manually.

xref:

CC @madsbk @ivirshup @jakirkham @joshmoore

@thewtex
Copy link
Owner Author

thewtex commented Mar 5, 2024

We can also write to kvikio GDSStore, when the input is a numpy array.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant