Merge pull request ESCOMP#435 from fvitt/clbr_cesm2_1_rel

Transport CL and Br when mid-atmos chem is used in cesm2.1

doc/ChangeLog

@@ -1,5 +1,145 @@
 ===============================================================
 
+Tag name: cam_cesm2_1_rel_57
+Originator(s): fvitt
+Date: 5 Jan 2023
+One-line Summary: Transport CL and BR in WACCM-MA chemistry mechanisms
+Github PR URL: https://github.com/ESCOMP/CAM/pull/435
+
+Purpose of changes (include the issue number and title text for each relevant GitHub issue):
+
+ Need to transport CL and BR #314
+
+Describe any changes made to build system: NA
+
+Describe any changes made to the namelist: NA
+
+List any changes to the defaults for the boundary datasets: NA
+
+Describe any substantial timing or memory changes: NA
+
+Code reviewed by: cacraig
+
+List all files eliminated: NA
+
+List all files added and what they do: NA
+
+List all existing files that have been modified, and describe the changes:
+
+M       src/chemistry/pp_waccm_ma/chem_mech.doc
+M       src/chemistry/pp_waccm_ma/chem_mech.in
+M       src/chemistry/pp_waccm_ma/chem_mods.F90
+M       src/chemistry/pp_waccm_ma/m_rxt_id.F90
+M       src/chemistry/pp_waccm_ma/m_spc_id.F90
+M       src/chemistry/pp_waccm_ma/mo_adjrxt.F90
+M       src/chemistry/pp_waccm_ma/mo_indprd.F90
+M       src/chemistry/pp_waccm_ma/mo_lin_matrix.F90
+M       src/chemistry/pp_waccm_ma/mo_lu_factor.F90
+M       src/chemistry/pp_waccm_ma/mo_lu_solve.F90
+M       src/chemistry/pp_waccm_ma/mo_nln_matrix.F90
+M       src/chemistry/pp_waccm_ma/mo_prod_loss.F90
+M       src/chemistry/pp_waccm_ma/mo_rxt_rates_conv.F90
+M       src/chemistry/pp_waccm_ma/mo_setrxt.F90
+M       src/chemistry/pp_waccm_ma/mo_sim_dat.F90
+ - remove CL and BR from the not-transported list
+ - add HO2 to the not-transported list
+
+M       src/chemistry/pp_waccm_ma_mam4/chem_mech.doc
+M       src/chemistry/pp_waccm_ma_mam4/chem_mech.in
+M       src/chemistry/pp_waccm_ma_mam4/chem_mods.F90
+M       src/chemistry/pp_waccm_ma_mam4/m_rxt_id.F90
+M       src/chemistry/pp_waccm_ma_mam4/m_spc_id.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_adjrxt.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_indprd.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_lin_matrix.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_lu_factor.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_lu_solve.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_nln_matrix.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_phtadj.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_prod_loss.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_rxt_rates_conv.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_setrxt.F90
+M       src/chemistry/pp_waccm_ma_mam4/mo_sim_dat.F90
+ - remove CL and BR from the not-transported list
+ - include Op2D, Op2P, and SF6
+
+M       src/chemistry/pp_waccm_mad/chem_mech.doc
+M       src/chemistry/pp_waccm_mad/chem_mech.in
+M       src/chemistry/pp_waccm_mad/chem_mods.F90
+M       src/chemistry/pp_waccm_mad/m_rxt_id.F90
+M       src/chemistry/pp_waccm_mad/m_spc_id.F90
+M       src/chemistry/pp_waccm_mad/mo_adjrxt.F90
+M       src/chemistry/pp_waccm_mad/mo_exp_sol.F90
+M       src/chemistry/pp_waccm_mad/mo_imp_sol.F90
+M       src/chemistry/pp_waccm_mad/mo_indprd.F90
+M       src/chemistry/pp_waccm_mad/mo_lin_matrix.F90
+M       src/chemistry/pp_waccm_mad/mo_lu_factor.F90
+M       src/chemistry/pp_waccm_mad/mo_lu_solve.F90
+M       src/chemistry/pp_waccm_mad/mo_nln_matrix.F90
+M       src/chemistry/pp_waccm_mad/mo_prod_loss.F90
+M       src/chemistry/pp_waccm_mad/mo_rxt_rates_conv.F90
+M       src/chemistry/pp_waccm_mad/mo_setrxt.F90
+M       src/chemistry/pp_waccm_mad/mo_sim_dat.F90
+ - remove CL and BR from the not-transported list
+ - add HO2 to the not-transported list
+ - explicitly solve CO2 to be consistent with other waccm mechanisms
+ - use scalar solver for d-region ion chemistry mechanisms (mad)
+
+M       src/chemistry/pp_waccm_mad_mam4/chem_mech.doc
+M       src/chemistry/pp_waccm_mad_mam4/chem_mech.in
+M       src/chemistry/pp_waccm_mad_mam4/chem_mods.F90
+M       src/chemistry/pp_waccm_mad_mam4/m_rxt_id.F90
+M       src/chemistry/pp_waccm_mad_mam4/m_spc_id.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_adjrxt.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_exp_sol.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_imp_sol.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_indprd.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_lin_matrix.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_lu_factor.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_lu_solve.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_nln_matrix.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_phtadj.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_prod_loss.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_rxt_rates_conv.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_setrxt.F90
+M       src/chemistry/pp_waccm_mad_mam4/mo_sim_dat.F90
+ - remove CL and BR from the not-transported list
+ - include Op2D, Op2P, and SF6
+ - use scalar solver for d-region ion chemistry mechanisms (mad)
+
+If there were any failures reported from running test_driver.sh on any test
+platform, and checkin with these failures has been OK'd by the gatekeeper,
+then copy the lines from the td.*.status files for the failed tests to the
+appropriate machine below.  All failed tests must be justified.
+
+cheyenne/intel:
+021 bl390 TBL.sh f1.9c4aqwmxdh outfrq3s+waccmx_ma_2000_cam4 9s ................................FAIL! rc= 7 at Wed Jan  4 17:11:16 MST 2023
+024 bl391 TBL.sh f1.9c4aqwmxidh outfrq3s 9s ...................................................FAIL! rc= 7 at Wed Jan  4 17:29:27 MST 2023
+
+cheyenne/intel/aux_cam:
+  ERP_Ld3.f19_f19_mg16.FW4madSD.cheyenne_intel.cam-outfrq3d (Overall: DIFF) details:
+    FAIL ERP_Ld3.f19_f19_mg16.FW4madSD.cheyenne_intel.cam-outfrq3d NLCOMP
+    FAIL ERP_Ld3.f19_f19_mg16.FW4madSD.cheyenne_intel.cam-outfrq3d BASELINE /glade/p/cesm/amwg/cesm_baselines/cam_cesm2_1_rel_56
+  ERS_Ln9.f19_f19_mg16.FXHIST.cheyenne_intel.cam-outfrq9s (Overall: DIFF) details:
+    FAIL ERS_Ln9.f19_f19_mg16.FXHIST.cheyenne_intel.cam-outfrq9s NLCOMP
+    FAIL ERS_Ln9.f19_f19_mg16.FXHIST.cheyenne_intel.cam-outfrq9s BASELINE /glade/p/cesm/amwg/cesm_baselines/cam_cesm2_1_rel_56
+  SMS_D_Ln9.f19_f19_mg16.FXHIST.cheyenne_intel.cam-outfrq9s_amie (Overall: DIFF) details:
+    FAIL SMS_D_Ln9.f19_f19_mg16.FXHIST.cheyenne_intel.cam-outfrq9s_amie NLCOMP
+    FAIL SMS_D_Ln9.f19_f19_mg16.FXHIST.cheyenne_intel.cam-outfrq9s_amie BASELINE /glade/p/cesm/amwg/cesm_baselines/cam_cesm2_1_rel_56
+ - expected failures due to change in chemistry mechanisms
+
+izumi/nag:
+050 bl426 TBL.sh f10c4aqwmxdm outfrq3s_newyear 9s .............................................FAIL! rc= 7 at Wed Jan  4 21:10:48 MST 2023
+056 bl471 TBL.sh f10c6aqwmadm outfrq3s 9s .....................................................FAIL! rc= 7 at Wed Jan  4 21:16:05 MST 2023
+ - expected failures due to change in chemistry mechanisms
+
+izumi/pgi: All PASS
+
+Summarize any changes to answers: Larger than roundoff for WACCM-MA configurations
+
+===============================================================
+===============================================================
+
 Tag name: cam_cesm2_1_rel_56
 Originator(s): fvitt
 Date: 13 Sep 2022