config.yml

sbx_vsearch:
  db_fp: ""
  threads: 4
  min_id: 0.85 #minimum identity for query-target match
  weak_id: 0.85 #set lower than min-id and you will get some weaker matches too
  userfields: "query+target+id2+alnlen+mism+gaps+qilo+qihi+tilo+tihi+qs+ts+qrow+trow" #fields for results file, see vsearch documentation for details
  iddef: 2 #the way "identity" is calculated, see vsearch docs for details (it's equal to (matching columns) / (alignment length) excluding terminal gaps)
  fasta_width: 0 #Width of alignment lines in fasta output, set to 0 to eliminate wrapping
  maxaccepts: 10 #Maximum number of hits to accept before stopping the search Default is 1