environment.yml

# This file specifies a conda environment with all the dependencies needed to develop chimeraviz locally.
# See the `README.md` file for more information.

name: chimeraviz_release
channels:
  - bioconda
  - conda-forge 
  - defaults
dependencies:
  # R
  - r-base=3.6.1
  # CRAN
  - r-gridbase
  - r-rcolorbrewer
  - r-RCircos
  - r-rmarkdown
  - r-DT
  - r-plyr
  - r-dplyr
  - r-ArgumentCheck
  - r-gtools
  - r-magick
  - r-data.table
  - r-testthat
  - r-roxygen2
  - r-devtools
  - r-knitr
  - r-lintr
  # BioConductor
  - bioconductor-rsamtools
  - bioconductor-gviz
  - bioconductor-genomeinfodb
  - bioconductor-genomicalignments
  - bioconductor-AnnotationDbi
  - bioconductor-org.Hs.eg.db
  - bioconductor-org.Mm.eg.db
  - bioconductor-graph
  - bioconductor-Rgraphviz
  - bioconductor-BiocStyle
  - bioconductor-Biostrings
  - bioconductor-GenomicRanges
  - bioconductor-IRanges
  - bioconductor-Gviz
  - bioconductor-S4Vectors
  - bioconductor-ensembldb
  - bioconductor-AnnotationFilter