DESCRIPTION

Package: chimeraviz
Type: Package
Title: Visualization tools for gene fusions
Version: 1.29.0
Authors@R: c(
  person(
    given = "Stian",
    family = "Lågstad",
    email = "stianlagstad@gmail.com",
    role = c("aut", "cre")),
  person(
    given = "Sen",
    family = "Zhao",
    email = "Sen.Zhao@rr-research.no",
    role = "ctb"),
  person(
    given = "Andreas M.",
    family = "Hoff",
    email = "andreas.m.hoff@rr-research.no",
    role = "ctb"),
  person(
    given = "Bjarne",
    family = "Johannessen",
    email = "Bjarne.Johannessen@rr-research.no",
    role = "ctb"),
  person(
    given = "Ole Christian",
    family = "Lingjærde",
    email = "ole@ifi.uio.no",
    role = "ctb"),
  person(
    given = "Rolf",
    family = "Skotheim",
    email = "Rolf.I.Skotheim@rr-research.no",
    role = "ctb"))
Description: chimeraviz manages data from fusion gene finders and provides
    useful visualization tools.
License: Artistic-2.0
LazyData: TRUE
Imports:
    methods,
    grid,
    Rsamtools,
    GenomeInfoDb,
    GenomicAlignments,
    RColorBrewer,
    graphics,
    AnnotationDbi,
    RCircos,
    org.Hs.eg.db,
    org.Mm.eg.db,
    rmarkdown,
    graph,
    Rgraphviz,
    DT,
    plyr,
    dplyr,
    BiocStyle,
    checkmate,
    gtools,
    magick
Depends:
    Biostrings,
    GenomicRanges,
    IRanges,
    Gviz,
    S4Vectors,
    ensembldb,
    AnnotationFilter,
    data.table
Suggests:
    testthat,
    roxygen2,
    devtools,
    knitr,
    lintr
SystemRequirements: bowtie, samtools, and egrep are required for some
    functionalities
RoxygenNote: 7.1.1
VignetteBuilder: knitr
biocViews: Infrastructure, Alignment
Encoding: UTF-8
URL: https://github.com/stianlagstad/chimeraviz
BugReports: https://github.com/stianlagstad/chimeraviz/issues