From 4c55e8d3bf8ef2ad0c44349fbae2c45782f63cce Mon Sep 17 00:00:00 2001 From: Matt McCormick Date: Thu, 5 May 2022 07:40:56 -0400 Subject: [PATCH] COMP: Pre-install ImageJ in notebook CI setup --- .github/workflows/notebook-test.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/notebook-test.yml b/.github/workflows/notebook-test.yml index 71c80bd..80e55ce 100644 --- a/.github/workflows/notebook-test.yml +++ b/.github/workflows/notebook-test.yml @@ -19,6 +19,8 @@ jobs: run: | python3 -m pip install --upgrade pip python3 -m pip install -e ".[test]" + python3 -m pip install pyimagej + python3 -c "import imagej; ij = imagej.init('2.5.0'); print(ij.getVersion())" - name: Test notebooks run: | - pytest --nbmake --nbmake-timeout=3000 examples/*ipynb + pytest --nbmake --nbmake-timeout=3000 examples/*ipynb \ No newline at end of file