DESCRIPTION

Package: mizer
Title: Dynamic Multi-Species Size Spectrum Modelling
Date: 2024-11-14
Type: Package
Description: A set of classes and methods to set up and run multi-species, trait
    based and community size spectrum ecological models, focused on the marine
    environment.
Maintainer: Gustav Delius <gustav.delius@york.ac.uk>
Authors@R: c(person("Gustav", "Delius", email="gustav.delius@york.ac.uk",
                    role=c("cre", "aut", "cph"),
                    comment = c(ORCID = "0000-0003-4092-8228")),
             person("Finlay", "Scott", email="drfinlayscott@gmail.com", 
                    role=c("aut", "cph")),
             person("Julia", "Blanchard", email="julia.blanchard@utas.edu.au",
                    role=c("aut", "cph"),
                    comment = c(ORCID = "0000-0003-0532-4824")),
             person("Ken", "Andersen", email="kha@aqua.dtu.dk",
                    role=c("aut", "cph"),
                    comment = c(ORCID = "0000-0002-8478-3430")),
             person("Richard", "Southwell", email="richard.southwell@york.ac.uk",
                    role=c("ctb", "cph")))
Version: 2.5.3.9001
License: GPL-3
Imports:
    assertthat,
    deSolve,
    dplyr,
    ggplot2 (>= 3.4.0),
    ggrepel,
    grid,
    lubridate,
    methods,
    plotly,
    plyr,
    progress,
    Rcpp,
    reshape2,
    rlang,
    lifecycle
LinkingTo: Rcpp
Depends:
    R (>= 3.1)
Suggests:
    testthat (>= 3.0.0),
    vdiffr,
    roxygen2,
    knitr,
    rmarkdown,
    pkgdown,
    covr,
    spelling
Collate:
    'age_mat.R'
    'helpers.R'
    'MizerParams-class.R'
    'MizerSim-class.R'
    'reproduction.R'
    'saveParams.R'
    'species_params.R'
    'setColours.R'
    'setInteraction.R'
    'setPredKernel.R'
    'setSearchVolume.R'
    'setMaxIntakeRate.R'
    'setMetabolicRate.R'
    'setMetadata.R'
    'setExtMort.R'
    'setExtEncounter.R'
    'setReproduction.R'
    'setResource.R'
    'setFishing.R'
    'setInitialValues.R'
    'setBevertonHolt.R'
    'upgrade.R'
    'selectivity_funcs.R'
    'pred_kernel_funcs.R'
    'resource_dynamics.R'
    'resource_semichemostat.R'
    'resource_logistic.R'
    'project.R'
    'mizer-package.R'
    'project_methods.R'
    'rate_functions.R'
    'summary_methods.R'
    'plots.R'
    'plotBiomassObservedVsModel.R'
    'plotYieldObservedVsModel.R'
    'animateSpectra.R'
    'newMultispeciesParams.R'
    'wrapper_functions.R'
    'newSingleSpeciesParams.R'
    'steady.R'
    'extension.R'
    'data.R'
    'RcppExports.R'
    'deprecated.R'
    'get_initial_n.R'
    'compareParams.R'
    'customFunction.R'
    'manipulate_species.R'
    'calibrate.R'
    'match.R'
    'matchGrowth.R'
    'steadySingleSpecies.R'
    'defaults_edition.R'
    'validSpeciesParams.R'
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
Encoding: UTF-8
LazyData: true
URL: https://sizespectrum.org/mizer/, https://github.com/sizespectrum/mizer
BugReports: https://github.com/sizespectrum/mizer/issues
Language: en-GB
RdMacros: lifecycle
VignetteBuilder: knitr
Config/testthat/edition: 3