Skip to content

Latest commit

 

History

History
95 lines (59 loc) · 2.7 KB

NEWS.md

File metadata and controls

95 lines (59 loc) · 2.7 KB
Raw

UCSCXenaTools 1.6.0

  • Totally 2486 datasets are included in the current list.
  • Single cell hub was found disabled.
  • GDC hub was completely updated. The old GDC hub has been renamed to gdcHubV18.

UCSCXenaTools 1.5.0

  • Bugs fixed.
  • Removed useless action or check config files.
  • Removed the XenaShiny() function to reduce the dependencies.
  • Updated XenaData. Only minor datasets change found from previous data release.
  • Hiplot mirror is down, so we removed its usage in documentation (not delete internal code).
  • Added two new queries from xenaPython.

UCSCXenaTools 1.4.8

  • Updated to latest Xena dataset list.

UCSCXenaTools 1.4.7

  • 3 datasets were added into XenaData.
[1] "TCGA_survival_data_2.txt"                                  
[2] "clinical_CellLinePolyA_21.06_2021-06-15.tsv"               
[3] "CellLinePolyA_21.06_hugo_log2tpm_58581genes_2021-06-15.tsv"
  • Added support for gene symbol checking and data cache in fetch().

UCSCXenaTools 1.4.6

  • Added code to check hiplot server status.
  • Fixed check warnings to follow CRAN policy (#36).

UCSCXenaTools 1.4.5

  • Fixed the download bug for pan-cancer data hub due to unvalid URL. url_encode() is added internally to transform reserved characters (/ is kept).
  • Fixed the download bug because UCSCXenaShiny mutate the result of XenaQuery() and thus change the column number. This bug will not affect XenaTools itself.

UCSCXenaTools 1.4.4

  • Fixed the download bug because UCSCXenaShiny mutate the result of XenaQuery() and thus change the column order. This bug will not affect XenaTools itself.

UCSCXenaTools 1.4.3

  • Implemented using hiplot for fetch() functions.

UCSCXenaTools 1.4.1 (1.4.2)

  • Removed unpublished Xena hub TDI.

UCSCXenaTools 1.4.0

  • Supported downloading data from Hiplot mirror site (https://xena.hiplot.com.cn/).

UCSCXenaTools 1.3.6

  • Fixed a bug about try times for data download.
  • Make sure a message instead of an error will be returned if download process failed.

UCSCXenaTools 1.3.5

  • Added TDI data Hub containing 9 new datasets.

UCSCXenaTools 1.3.4

  • Updated UCSC Xena datasets, now 1670 datasets available.

UCSCXenaTools 1.3.3

  • Added fetch_sparse_values() function.
  • Updated treehouse URL.
  • Added treehouse datasets.

UCSCXenaTools 1.3.2

  • Fixed bug about an error happened when querying mutation data.
  • Dropped "Treehouse" data hub.
  • Updated code to update Xena hub datasets.

UCSCXenaTools 1.3.1

  • Added max_try option in query and download functions, so they can handle internet connection issue better

UCSCXenaTools 1.3.0

  • Added a new data hub: PCAWG Xena Hub (#24).
  • Added a new data hub: Kids First Xena Hub (#24).
  • Updated data update function more robustly.