setup.py

#!/usr/bin/env python


import os
from distutils.core import setup

from setuptools.command.test import test as TestCommand


def read(fname):
    return open(os.path.join(os.path.dirname(__file__), fname)).read()


# Can't import __meta__.py if the requirements aren't installed
# due to imports in __init__.py. This is a workaround.
meta = {}
exec(read("fissa/__meta__.py"), meta)

install_requires = read("requirements.txt").splitlines()

extras_require = {}

# Notebook dependencies for plotting
extras_require["plotting"] = read("requirements-plots.txt").splitlines()

# Dependencies for generating documentation
extras_require["docs"] = read("requirements-docs.txt").splitlines()

# Test dependencies
extras_require["test"] = read("requirements-test.txt").splitlines()

# Development dependencies
extras_require["dev"] = read("requirements-dev.txt").splitlines()

# Everything as a list. Replicated items are removed by use of set with {}.
extras_require["all"] = sorted({x for v in extras_require.values() for x in v})


class PyTest(TestCommand):
    def finalize_options(self):
        TestCommand.finalize_options(self)
        self.test_args = []
        self.test_suite = True

    def run_tests(self):
        import pytest

        pytest.main(self.test_args)


setup(
    name=meta["name"],
    python_requires=">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*",
    install_requires=install_requires,
    extras_require=extras_require,
    version=meta["version"],
    author=meta["author"],
    author_email=meta["author_email"],
    description=meta["description"],
    url=meta["url"],
    package_dir={meta["name"]: os.path.join(".", meta["path"])},
    packages=[meta["name"]],
    license="GNU",
    long_description=read("README.rst"),
    # https://pypi.org/pypi?%3Aaction=list_classifiers
    classifiers=[
        "Development Status :: 5 - Production/Stable",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
        "Natural Language :: English",
        "Operating System :: OS Independent",
        "Programming Language :: Python",
        "Programming Language :: Python :: 2",
        "Programming Language :: Python :: 2.7",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.5",
        "Programming Language :: Python :: 3.6",
        "Programming Language :: Python :: 3.7",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Topic :: Scientific/Engineering",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
        "Topic :: Scientific/Engineering :: Information Analysis",
    ],
    project_urls={
        "Documentation": "https://fissa.readthedocs.io",
        "Source Code": "https://github.com/rochefort-lab/fissa",
        "Bug Tracker": "https://github.com/rochefort-lab/fissa/issues",
        "Citation": "https://www.doi.org/10.1038/s41598-018-21640-2",
    },
    cmdclass={"test": PyTest},
)