forked from wcatykid/Graph-Based-Molecular-Synthesis
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Atom.h
78 lines (56 loc) · 2.13 KB
/
Atom.h
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
/*
* This file is part of esynth.
*
* esynth is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* esynth is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with esynth. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef _ATOM_GUARD
#define _ATOM_GUARD 1
#include <string>
#include "AtomT.h"
typedef unsigned MoleculeT;
typedef unsigned BooleanT;
const unsigned RIGID = 0;
const unsigned LINKER = 1;
const unsigned COMPLEX = 2;
class Molecule;
class Atom
{
protected:
// This atom's type
AtomT atomType;
public:
const AtomT& getAtomType() const { return this->atomType; }
virtual bool CanConnectToAny() const { return false; }
virtual bool SpaceToConnect() const { return false; }
virtual bool CanConnectTo(const Atom& that) const { return false; }
virtual int getConnectionID() const { return -1; }
virtual void setConnectionID(unsigned) { throw "Should not be called."; }
virtual int getMaxConnect() const { return 0; }
virtual void addExternalConnection() { throw "Should not be called."; }
static Atom* ConstructAtom(const Atom& atom);
virtual bool IsSimple() const { return true; }
virtual bool IsConnectable() const { return false; }
virtual bool IsLinkerAtom() const { return false; }
virtual bool IsRigidAtom() const { return false; }
virtual const Molecule* getOwnerFragment() const { throw "Should not be called."; }
Atom(const Atom&);
Atom() {}
Atom(const AtomT& aType);
Atom(const std::string& aType);
virtual ~Atom();
virtual std::string toString() const;
friend std::ostream& operator<< (std::ostream& os, Atom& atom);
bool operator==(const Atom& that) const;
};
#endif