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Support for IG format #11

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rieck opened this issue Jul 22, 2014 · 0 comments
Open

Support for IG format #11

rieck opened this issue Jul 22, 2014 · 0 comments

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@rieck
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rieck commented Jul 22, 2014

A sequence file in IG format can contain several sequences, each consisting of a number of comment lines that must begin with a semicolon (";"), a line with the sequence name (it may not contain spaces) and the sequence itself terminated with the termination character '1' for linear or '2' for circular sequences.

Here is an example for the sequence named "AB000263" with linear characteristic:

 ; this is a comment.
 AB000263
 ACAAGATGCCATTGTCCCCCGGCCTCCTGCTGCTGCTGCTCTCCGGGGCCACGGCCACCGCTGCCCTGCC
 CCTGGAGGGTGGCCCCACCGGCCGAGACAGCGAGCATATGCAGGAAGCGGCAGGAATAAGGAAAAGCAGC
 CTCCTGACTTTCCTCGCTTGGTGGTTTGAGTGGACCTCCCAGGCCAGTGCCGGGCCCCTCATAGGAGAGG
 AAGCTCGGGAGGTGGCCAGGCGGCAGGAAGGCGCACCCCCCCAGCAATCCGCGCGCCGGGACAGAATGCC
 CTGCAGGAACTTCTTCTGGAAGACCTTCTCCTCCTGCAAATAAAACCTCACCCATGAATGCTCACGCAAG
 TTTAATTACAGACCTGAA1
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