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Provide data-structure requirements for every datatype #62

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sven1103 opened this issue Jan 26, 2021 · 0 comments
Open
5 of 50 tasks

Provide data-structure requirements for every datatype #62

sven1103 opened this issue Jan 26, 2021 · 0 comments

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@sven1103
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sven1103 commented Jan 26, 2021

Currently, the repo misses documentation about the prerequisite data structure the data needs to have in order to be registered by the ETL scripts.

Idea: Provide a datatype centric description of the data-structure needed.

Bonus: List the ETL scripts that are able to deal with a specific data-structure and type.

ETL scripts to document (30):

  • register-idXML-dropbox
  • register-archived-ms-raw
  • register-attachments-dropbox
  • register-bam-dropbox
  • register-chip-image
  • register-convert-ms-vendor-format
  • register-document-dropbox
  • register-epitope-selection-dropbox
  • register-fasta-dropbox
  • register-fastq-dropbox
  • register-fastq-dropbox-with-metadata
  • register-fastqc-dropbox
  • register-featureXML-dropbox
  • register-hlatyping-dropbox
  • register-imaging-dropbox
  • register-imgag-dropbox
  • register-immunomonitoring-dropbox
  • register-iontorrent-data
  • register-microarrays-dropbox
  • register-mtb-data-dropbox
  • register-mzML-dropbox
  • register-nanopore-dropbox
  • register-nmr-dropbox
  • register-omero-metadata
  • register-peptidedata-dropbox
  • register-qcml-dropbox
  • register-qpcr-dropbox
  • register-rma-dropbox
  • register-vcf-dropbox
  • test-dropbox

Workflow registration scripts (20):

  • register-wf-16staxonomicprofiling
  • register-wf-epitopeprediction
  • register-wf-hlatyping
  • register-wf-individualizedproteome
  • register-wf-ligandomicsid
  • register-wf-ligandomicsqc
  • register-wf-mapping
  • register-wf-maqc
  • register-wf-maxquant
  • register-wf-mergenngsdata
  • register-wf-msqc
  • register-wf-ngsqc
  • register-wf-peakpicking
  • register-wf-peptideid
  • register-wf-qedda
  • register-wf-rnaexpressionanalysis
  • register-wf-shrna
  • register-wf-variantannotation
  • register-wf-variantcalling
  • register-wiff-dropbox
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