Ensure atom positions are expressed in the new basis when initializing Phase with structure #1190
Workflow file for this run
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| name: build | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - '*' | |
| workflow_dispatch: | |
| workflow: '*' | |
| env: | |
| MPLBACKEND: agg | |
| jobs: | |
| code: | |
| name: code style | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: psf/black@stable | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - uses: isort/isort-action@master | |
| with: | |
| configuration: --profile black --filter-files --force-sort-within-sections --check-only --diff | |
| - name: Install Black with Jupyter extension | |
| run: | | |
| pip install black[jupyter] | |
| - name: Check code style of Jupyter notebooks | |
| run: | | |
| black --diff --line-length 77 doc/tutorials/*.ipynb | |
| # Make sure all necessary files will be included in a release | |
| manifest: | |
| name: check manifest | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| - name: Install dependencies | |
| run: | | |
| pip install manifix | |
| - name: Check MANIFEST.in file | |
| run: | | |
| python setup.py manifix | |
| build-with-pip: | |
| name: ${{ matrix.os }}-py${{ matrix.python-version }}${{ matrix.LABEL }} | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 15 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.10", "3.11"] | |
| include: | |
| - os: ubuntu-latest | |
| python-version: 3.7 | |
| OLDEST_SUPPORTED_VERSION: true | |
| DEPENDENCIES: diffpy.structure==3 matplotlib==3.3 | |
| LABEL: -oldest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install depedencies and package | |
| shell: bash | |
| run: | | |
| pip install -U -e .'[doc, tests]' | |
| - name: Install oldest supported version | |
| if: ${{ matrix.OLDEST_SUPPORTED_VERSION }} | |
| run: | | |
| pip install ${{ matrix.DEPENDENCIES }} | |
| - name: Display Python, pip and package versions | |
| run: | | |
| python -V | |
| pip -V | |
| pip list | |
| - name: Run docstring tests | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| continue-on-error: true | |
| run: | | |
| pytest --doctest-modules --ignore-glob=orix/tests orix/*.py | |
| - name: Run tests | |
| run: | | |
| pytest -n 2 --cov=orix --pyargs orix | |
| - name: Generate line coverage | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| coverage report --show-missing | |
| - name: Upload coverage to Coveralls | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel: true | |
| coveralls-finish: | |
| needs: build-with-pip | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls finished | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel-finished: true |