conf.json.example

{
    "server-address": "http://127.0.0.1:8890/sparql",
    "url-json-conf-attribute": "format",
    "url-json-conf-value": "application/sparql-results+json",
    "url-default-graph-attribute": "default-graph-uri",
    "url-default-graph-value": "http://pgxlod.loria.fr/",
    "url-query-attribute": "query",
    "timeout": 10000000,
    "part-of-predicates": [
        "http://purl.obolibrary.org/obo/BFO_0000050"
    ],
    "has-part-predicates": [
        "http://purl.obolibrary.org/obo/BFO_0000051"
    ],
    "depends-on-predicates": [
        "http://purl.obolibrary.org/obo/RO_0002502"
    ],
    "integration-ontology-relationships-classes": [
        "http://pgxo.loria.fr/PharmacogenomicRelationship"
    ],
    "dimensions": [
        {
            "name": "GeneticFactor",
            "integration-ontology-top-classes": [
                "http://pgxo.loria.fr/GeneticFactor"
            ],
            "integration-ontology-top-linking-predicates": [
                "http://pgxo.loria.fr/isAssociatedWith",
                "http://pgxo.loria.fr/isNotAssociatedWith"
            ],
            "preorder": "PartOfPreorder",
            "comparison-ontology-base-uris": [
            ],
            "depends-on-similarity": false
        },
        {
            "name": "Drug",
            "integration-ontology-top-classes": [
                "http://pgxo.loria.fr/Drug"
            ],
            "integration-ontology-top-linking-predicates": [
                "http://pgxo.loria.fr/isAssociatedWith",
                "http://pgxo.loria.fr/isNotAssociatedWith"
            ],
            "preorder": "MsciPreorder",
            "comparison-ontology-base-uris": [
                "http://purl.obolibrary.org/obo/CHEBI_",
                "http://bio2rdf.org/chebi:",
                "http://identifiers.org/chebi/",
                "http://purl.bioontology.org/ontology/UATC/",
                "http://bio2rdf.org/atc:",
                "http://identifiers.org/atc/"
            ],
            "depends-on-similarity": false
        },
        {
            "name": "Phenotype",
            "integration-ontology-top-classes": [
                "http://pgxo.loria.fr/Phenotype"
            ],
            "integration-ontology-top-linking-predicates": [
                "http://pgxo.loria.fr/isAssociatedWith",
                "http://pgxo.loria.fr/isNotAssociatedWith"
            ],
            "preorder": "MsciPreorder",
            "comparison-ontology-base-uris": [
                "http://purl.bioontology.org/ontology/MESH/",
                "http://bio2rdf.org/mesh:",
                "http://identifiers.org/mesh/"
            ],
            "depends-on-similarity": true
        }
    ],
    "output-equal-predicate": "http://www.w3.org/2002/07/owl#sameAs",
    "output-equiv-predicate": "http://www.w3.org/2004/02/skos/core#closeMatch",
    "output-leq-predicate": "http://www.w3.org/2004/02/skos/core#broadMatch",
    "output-geq-predicate": "http://www.w3.org/2004/02/skos/core#narrowMatch",
    "output-do-related-predicate": "http://www.w3.org/2004/02/skos/core#relatedMatch"
}