pepr 0.5.0 - 2023-11-16

Fixed

result class of appended attributes; it's no longer wrapped in a list
various other fixes and improvements

Changed

error message when nonexistent attribute is derived

Added

possibility to configure the sample and subsample table index attributes in the Project object constructor
possibility to initialize Project with no configuration file
ability to initialize a project from URL
auto initialization file detection: CSV (sample table) or YAML (project config)
duplicated sample auto-merging

pepr 0.4.0 - 2020-10-14

Changed

added multiple subsample_table support

Fixed

issues with config file determination

pepr 0.3.2 - 2020-06-03

Changed

package description

pepr 0.3.1 - 2020-05-27

Fixed

issues with auto path expansion in objects of Config class on Windows
issues with path absoluteness determination on Windows

pepr 0.3.0 - 2020-05-26

This version introduced backwards-incompatible changes.

Added

auto path expansion in Config class
attribute duplication functionality
config importing functionality
attribute removal functionality
possibility to define multi-attribute rules in attribute implication

Changed

project configuration file to follow PEP2.0.0 specification. Browse the specification for changes related to config format

pepr 0.2.2 - 2020-01-09

Changed

downgrade exception from error to warining when missing envieonment variable is found

Fixed

issues related to subsample table functionality; #33

pepr 0.2.1 - 2019-06-21

Changed

checkSection method can be used with a mixture of section names and indices.
improved interaction between pepr and BiocProject

pepr 0.2 - 2019-04-17

Changed

keys in the config file: sample_annotation to sample_table, sample_subannotation to subsample_table. Backwards compatibility is preserved.

pepr 0.1 - 2019-02-01

Added

add activateSubproject method
add fetchSamples function
add checkSection method on Config object

Changed

if the subproject argument of the Project() function is not present in the config, the original project is returned
paths in the bioconductor section of the config are made absolute and environment variables are read
no sample annotation is allowed if any subprojects are defined in the config
fixed the problem with paths expansions in sample subannotations case

pepr 0.0.4 - 2018-11-14

Changed

change the Project object construction, the subproject can be activated at construction time
change implied/derived_columns to implied/derived_attributes. Backwards compatible
change constants to constantAttributes. Backwards compatible
fix expandPath() function, add error when environment variable not found

pepr 0.0.3 - 2018-09-12

Added

add derived_columns functionality
add implied_columns functionality
add subannotation functionality

pepr 0.0.2 - 2018-09-06

Added

first release, includes basic PEP reading functions