Error running Ex1_making_grids #12

mgnkrr · 2023-03-16T04:25:50Z

When I run the first cell in the first example notebook, I get the following error output:

ImportError Traceback (most recent call last)
Cell In[1], line 3
1 import numpy as np
2 import pandas as pd
----> 3 from plateflex import Grid

File ~\Anaconda3\envs\pflex\lib\site-packages\plateflex_init_.py:157
155 # -- coding: utf-8 --
156 from . import conf as cf
--> 157 from . import estimate
158 from . import plotting
159 from .classes import Grid, TopoGrid, GravGrid, BougGrid, FairGrid

File ~\Anaconda3\envs\pflex\lib\site-packages\plateflex\estimate.py:57
55 import numpy as np
56 import pymc3 as pm
---> 57 from plateflex.flex import flex
58 from plateflex import conf as cf
59 from theano.compile.ops import as_op

ImportError: DLL load failed while importing flex: The specified module could not be found.

Can you help me with this? Thank you!

paudetseis · 2023-03-16T13:54:23Z

Hi @mgnkrr ,
It looks like PlateFlex did not install properly, if you cannot load the Grid module from it. From your conda environment, what happens if you do import plateflex?

If this returns an error, I will need to know how you installed the code and if there were any error messages during compilation. You could do a screen capture and post them here. You could also look into the other issues reported on GitHub, and perhaps the answer has been provided before.

mgnkrr · 2023-03-16T17:40:45Z

Hi Dr. Audet,

Thanks so much for your quick reply. Here's the error I get when I run import plateflex:

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "C:\Users\mk44584\PlateFlex\plateflex\__init__.py", line 157, in <module>
    from . import estimate
  File "C:\Users\mk44584\PlateFlex\plateflex\estimate.py", line 57, in <module>
    from plateflex.flex import flex
ModuleNotFoundError: No module named 'plateflex.flex'

I installed the code using the following:

conda create -n pflex python=3.8 fortran-compiler numpy=1.21.2 pymc3=3.10.0 matplotlib=3.4.3 seaborn=0.11.2 scikit-image=0.18.3 pandas=1.3.2 -c conda-forge
conda activate pflex
git clone https://github.com/paudetseis/PlateFlex.git
cd PlateFlex
pip install .

I had a few errors during compilation, but I was able to fix them by installing different versions of various packages. Here's the output from conda list:
pflex_conda_list.txt

Thanks again for your help.

paudetseis · 2023-06-15T13:29:39Z

Hi @mgnkrr and @super-xl
This problem likely arises because of problems during compilation of the fortran code packaged with PlateFlex. Can you share the output of your terminal when you install the code, specifically the output of the command pip install .. A screen capture would be most helpful. Please also let me know which OS you are working under (e.g., MacOS, Ubuntu, Windows, etc.) and its version.

LiXiong0906 · 2023-06-15T15:29:39Z

Hi @paudetseis
Thanks so much for your quick reply.
I'm working under Windows 10.

(pflex1) C:\Users\admin\Desktop\PlateFlex-master>pip install .
Processing c:\users\admin\desktop\plateflex-master
Preparing metadata (setup.py) ... done
Requirement already satisfied: numpy>=1.15 in d:\anaconda3\envs\pflex1\lib\site-packages (from plateflex==0.1.0) (1.21.2)
Requirement already satisfied: pymc3 in d:\anaconda3\envs\pflex1\lib\site-packages (from plateflex==0.1.0) (3.10.0)
Requirement already satisfied: matplotlib in d:\anaconda3\envs\pflex1\lib\site-packages (from plateflex==0.1.0) (3.4.3)
Requirement already satisfied: seaborn in d:\anaconda3\envs\pflex1\lib\site-packages (from plateflex==0.1.0) (0.11.2)
Requirement already satisfied: cycler>=0.10 in d:\anaconda3\envs\pflex1\lib\site-packages (from matplotlib->plateflex==0.1.0) (0.11.0)
Requirement already satisfied: kiwisolver>=1.0.1 in d:\anaconda3\envs\pflex1\lib\site-packages (from matplotlib->plateflex==0.1.0) (1.4.4)
Requirement already satisfied: pillow>=6.2.0 in d:\anaconda3\envs\pflex1\lib\site-packages (from matplotlib->plateflex==0.1.0) (9.5.0)
Requirement already satisfied: pyparsing>=2.2.1 in d:\anaconda3\envs\pflex1\lib\site-packages (from matplotlib->plateflex==0.1.0) (3.0.9)
Requirement already satisfied: python-dateutil>=2.7 in d:\anaconda3\envs\pflex1\lib\site-packages (from matplotlib->plateflex==0.1.0) (2.8.2)
Requirement already satisfied: arviz>=0.9.0 in d:\anaconda3\envs\pflex1\lib\site-packages (from pymc3->plateflex==0.1.0) (0.11.1)
Requirement already satisfied: theano-pymc==1.0.11 in d:\anaconda3\envs\pflex1\lib\site-packages (from pymc3->plateflex==0.1.0) (1.0.11)
Requirement already satisfied: scipy>=0.18.1 in d:\anaconda3\envs\pflex1\lib\site-packages (from pymc3->plateflex==0.1.0) (1.10.1)
Requirement already satisfied: pandas>=0.18.0 in d:\anaconda3\envs\pflex1\lib\site-packages (from pymc3->plateflex==0.1.0) (1.3.2)
Requirement already satisfied: patsy>=0.5.1 in d:\anaconda3\envs\pflex1\lib\site-packages (from pymc3->plateflex==0.1.0) (0.5.3)
Requirement already satisfied: fastprogress>=0.2.0 in d:\anaconda3\envs\pflex1\lib\site-packages (from pymc3->plateflex==0.1.0) (1.0.3)
Requirement already satisfied: typing-extensions>=3.7.4 in d:\anaconda3\envs\pflex1\lib\site-packages (from pymc3->plateflex==0.1.0) (3.10.0.2)
Requirement already satisfied: dill in d:\anaconda3\envs\pflex1\lib\site-packages (from pymc3->plateflex==0.1.0) (0.3.6)
Requirement already satisfied: setuptools>=38.4 in d:\anaconda3\envs\pflex1\lib\site-packages (from arviz>=0.9.0->pymc3->plateflex==0.1.0) (59.8.0)
Requirement already satisfied: packaging in d:\anaconda3\envs\pflex1\lib\site-packages (from arviz>=0.9.0->pymc3->plateflex==0.1.0) (23.1)
Requirement already satisfied: xarray>=0.16.1 in d:\anaconda3\envs\pflex1\lib\site-packages (from arviz>=0.9.0->pymc3->plateflex==0.1.0) (2023.1.0)
Requirement already satisfied: netcdf4 in d:\anaconda3\envs\pflex1\lib\site-packages (from arviz>=0.9.0->pymc3->plateflex==0.1.0) (1.6.3)
Requirement already satisfied: pytz>=2017.3 in d:\anaconda3\envs\pflex1\lib\site-packages (from pandas>=0.18.0->pymc3->plateflex==0.1.0) (2023.3)
Requirement already satisfied: six in d:\anaconda3\envs\pflex1\lib\site-packages (from patsy>=0.5.1->pymc3->plateflex==0.1.0) (1.16.0)
Requirement already satisfied: cftime in d:\anaconda3\envs\pflex1\lib\site-packages (from netcdf4->arviz>=0.9.0->pymc3->plateflex==0.1.0) (1.6.2)
Building wheels for collected packages: plateflex
Building wheel for plateflex (setup.py) ... done
Created wheel for plateflex: filename=plateflex-0.1.0-cp38-cp38-win_amd64.whl size=31851487 sha256=849e354a5fcdaaafd4d33dd49def4a76339228fe5d51c6a373eb491cb7010ffe
Stored in directory: c:\users\admin\appdata\local\pip\cache\wheels\79\cc\cc\ee6ba577751b6d2336e85a873030b0fbf0cd45c726067e477e
Successfully built plateflex
Installing collected packages: plateflex
Successfully installed plateflex-0.1.0

(pflex1) C:\Users\admin\Desktop\PlateFlex-master>python
Python 3.8.16 | packaged by conda-forge | (default, Feb 1 2023, 15:53:35) [MSC v.1929 64 bit (AMD64)] on win32
Type "help", "copyright", "credits" or "license" for more information.

import plateflex
Traceback (most recent call last):
File "", line 1, in
File "C:\Users\admin\Desktop\PlateFlex-master\plateflex_init_.py", line 157, in
from . import estimate
File "C:\Users\admin\Desktop\PlateFlex-master\plateflex\estimate.py", line 57, in
from plateflex.flex import flex
ModuleNotFoundError: No module named 'plateflex.flex'

iaomeng · 2024-04-13T10:07:07Z

have you solved this problem

LiXiong0906 · 2024-04-13T11:52:50Z

have you solved this problem

This is a very strange question. After I changed my computer, I was able to install it.

iaomeng · 2024-04-14T02:55:17Z

have you solved this problem

This is a very strange question. After I changed my computer, I was able to install it.

well ,did you use the windows or linux ,i will appreciate it if you could share your conda list of the env

LiXiong0906 · 2024-04-19T07:15:01Z

你解决这个问题了吗

这是一个很奇怪的问题。我换了电脑后就可以安装了。

好吧，你使用的是 Windows 还是 Linux，如果你能分享你的环境 conda 列表，我将不胜感激

(pflex) C:\Users\admin>conda list

packages in environment at D:\anaconda3\envs\pflex:

Name Version Build Channel

iaomeng · 2024-04-26T02:30:46Z

thank u very much dear friend

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Error running Ex1_making_grids #12

Error running Ex1_making_grids #12

mgnkrr commented Mar 16, 2023

paudetseis commented Mar 16, 2023

mgnkrr commented Mar 16, 2023 •

edited

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paudetseis commented Jun 15, 2023

LiXiong0906 commented Jun 15, 2023

iaomeng commented Apr 13, 2024

LiXiong0906 commented Apr 13, 2024

iaomeng commented Apr 14, 2024

LiXiong0906 commented Apr 19, 2024

iaomeng commented Apr 26, 2024

Error running Ex1_making_grids #12

Error running Ex1_making_grids #12

Comments

mgnkrr commented Mar 16, 2023

paudetseis commented Mar 16, 2023

mgnkrr commented Mar 16, 2023 • edited Loading

paudetseis commented Jun 15, 2023

LiXiong0906 commented Jun 15, 2023

iaomeng commented Apr 13, 2024

LiXiong0906 commented Apr 13, 2024

iaomeng commented Apr 14, 2024

LiXiong0906 commented Apr 19, 2024

packages in environment at D:\anaconda3\envs\pflex:

Name Version Build Channel

iaomeng commented Apr 26, 2024

mgnkrr commented Mar 16, 2023 •

edited

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