Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ValueError: Substring not Found #40

Open
amootta opened this issue Nov 2, 2021 · 0 comments
Open

ValueError: Substring not Found #40

amootta opened this issue Nov 2, 2021 · 0 comments

Comments

@amootta
Copy link

amootta commented Nov 2, 2021

Hi all,
I am trying to run NGSCheckMate on paired normal-tumour samples. It seems to be running the samtools mpileup fine, and producing the appropriate vcf files. However, I received this error:
Traceback (most recent call last):
File "ncm.py", line 1440, in
run_mpileup()
File "ncm.py", line 1206, in run_mpileup
tag = filename[-1][0:filename[-1].rindex(".")]
ValueError: substring not found

could you please let me know how I could fix this? Thanks very much

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant