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Library generation

sbt discoveryJS/fullOptJS
sbt discoveryJVM/package
sbt publishLocal

Library generation html/nodejs

./update_cdn_libjs.sh

test

sbt discoveryJVM/test

coverage

sbt clean coverage discoveryJVM/test discoveryJVM/coverageReport
chromium ./jvm/target/scala-2.13/scoverage-report/index.html

dependencies

npm install axios --save-dev
npm install qs --save-dev
npm install browserify

memo

sbt compile
sbt discoveryJS/test
sbt discoveryJVM/test
sbt discoveryJS/fastOptJS 
sbt discoveryJS/fullOptJS

export NODE_OPTIONS=--openssl-legacy-provider
sbt discoveryJS/fastOptJS/webpack
sbt discoveryJS/fullOptJS/webpack


sbt discoveryJVM/testOnly inrae.semantic_web.QueryPlannerTest

d.ts generation test

npx -p typescript tsc ./js/target/scala-2.13/scalajs-bundler/main/discovery-opt.js --declaration --allowJs --emitDeclarationOnly --outDir types

local publication -> .ivy2

sbt publishLocal

oss.sonatype maven central repository publication

https://oss.sonatype.org/

sbt publish

NPM publication

sbt discoveryJS/fullOptJS/webpack
sbt npmPackageJson => genere package.json
npm view @p2m2/discovery version -> list published version
npm unpublish @p2m2/[email protected] -> unpublished lib
npm publish --access public

generate-changelog / Usage

type(category): description [flags]
Where type is one of the following:
  • breaking
  • build
  • ci
  • chore
  • docs
  • feat
  • fix
  • other
  • perf
  • refactor
  • revert
  • style
  • test

FORUM

<script type="text/javascript" src="/media/olivier/hdd-local/workspace/INRAE/P2M2/DISCOVERY/discovery/dist/discovery-web-dev.js"> </script> 
<script>
      var config = SWDiscoveryConfiguration
                    .proxy("http://localhost:8082")
                    .sparqlEndpoint("https://forum.semantic-metabolomics.fr/sparql/")
                    .sparqlEndpoint("https://query.wikidata.org/");

      SWDiscovery(config)
          .prefix("cito","http://purl.org/spar/cito/")
          .prefix("compound","http://rdf.ncbi.nlm.nih.gov/pubchem/compound/")
          .prefix("rdfs","http://www.w3.org/2000/01/rdf-schema#")
          .something("compound")
                 .set("compound:CID60823")
                  .isSubjectOf(URI("skos:closeMatch"),"supp")
                      .isSubjectOf(URI("http://www.wikidata.org/prop/P2175"),"medical_condition_treated")
                  
          .select("compound","supp","medical_condition_treated")
             .commit()
             .raw()
             .then((response) => {
		  console.log(JSON.stringify(response))
                  for (let i=0;i<response.results.bindings.length;i++) {
                    let study=response.results.bindings[i]["study"].value;
                   // let label=response.results.datatypes["label"][study][0].value; 
                     let label="*";
                     console.log(study+"-->"+label);
                  }
            }).catch( (error) => {
              console.error(" -- catch exception --")
              console.error(error)
            } );
 </script>