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EP2M2 : Metabolomic Target Analyzes Manager.

Version

0.2.1

Reuse compliance


Reuse compliant

Tests


result total passed failed todo
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Features

  • Extraction of formats files of the metabolomics data acquisition devices of the P2M2 platform
    • gcms
    • openlabcds
    • masslynx-txt
    • masslynx-xml
    • xcalibur
  • Analyzes concatenation
  • Custom post-process
  • Data base of:
    • External compound
    • Devices
    • Associated calibration curves

Installation

Requirements

  • adminitrator rights
  • docker
  • docker-compose
  • docker with sudo rights

Linux

  1. Clone the repository
  2. Define user and password for the database and the database name
cd EP2M2
echo "PGUSER=<user_name>" > ./secrets/pg.env
echo "PGPASSWORD=<password>" >> ./secrets/pg.env
echo "PGDATABASE=<database_name>" >> ./secrets/pg.env
echo "POSTGRES_USER=\$PGUSER" >> ./secrets/pg.env
echo "POSTGRES_PASSWORD=\$PGPASSWORD" >> ./secrets/pg.env
echo "POSTGRES_DB=\$PGDATABASE" >> ./secrets/pg.env
  1. Launch the docker-compose
docker compose -f compose.yaml up -d

Contibution

let's go

Report issue

  • Directly on github
  • Send e-mail at team