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    27 repositories

    • nf-metadata-dictionary

      Public
      Versioned releases of the NF metadata dictionary.
      metadata
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •2•3•68•1•Updated Nov 26, 2024Nov 26, 2024

    • accent

      Public
      AI-Assisted Curation/Content ENhancement Tool for Synapse
      Clojure
      •
      MIT License
      •1•0•1•0•Updated Nov 21, 2024Nov 21, 2024

    • jobs

      Public
      HTML
      •0•0•5•0•Updated Nov 21, 2024Nov 21, 2024

    • portal-chatbot

      Public
      Configuration files for NF Portal-flavored Synapse chatbot
      MIT License
      •1•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • nfportalutils

      Public
      Utilities for NF Portal project and data management
      R
      •
      MIT License
      •2•2•41•2•Updated Nov 15, 2024Nov 15, 2024

    • nf-research-tools-schema

      Public
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •1•0•8•2•Updated Nov 8, 2024Nov 8, 2024

    • NF_data_curator

      Public
      Data Ingest Shiny App
      R
      •
      Apache License 2.0
      •21•1•8•0•Updated Oct 30, 2024Oct 30, 2024

    • usagereports

      Public
      R
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Oct 4, 2024Oct 4, 2024

    • cnf-cell-lines

      Public
      HTML
      •0•0•0•1•Updated Jul 29, 2024Jul 29, 2024

    • nftc-llm

      Public
      Python
      •0•1•0•0•Updated Jul 12, 2024Jul 12, 2024

    • tutorials

      Public
      Materials for various tutorials
      HTML
      •0•0•0•0•Updated Jun 22, 2024Jun 22, 2024

    • datahub

      Public
      A centralized location for storing curated data ready for inclusion in cBioPortal.
      HTML
      •120•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • nf-data-processing-testing

      Public
      Scripts for nextflow workflow testing
      Shell
      •
      MIT License
      •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • data_curator_config

      Public
      Project configurations for the Data Curator App
      19•0•0•0•Updated May 31, 2024May 31, 2024

    • biobank-release-2

      Public
      HTML
      •
      Other
      •0•0•7•0•Updated Mar 10, 2024Mar 10, 2024

    • research

      Public
      Sharing analyses of NF-OSI resources with the community
      R
      •1•0•4•2•Updated Jun 14, 2023Jun 14, 2023

    • kairos

      Public
      kairos: NF Analysis Explorer
      R
      •
      Other
      •2•0•14•0•Updated Mar 2, 2023Mar 2, 2023

    • actions

      Public
      Actions for operations supporting the NF community platform (based on https://github.com/r-lib/actions)
      R
      •0•0•3•0•Updated Feb 25, 2023Feb 25, 2023

    • NF-virus-detection

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Nov 30, 2022Nov 30, 2022

    • vcf2maf

      Public
      Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
      Perl
      •
      Other
      •218•0•0•0•Updated Aug 26, 2022Aug 26, 2022

    • formd

      Public
      R
      •
      Other
      •0•0•4•0•Updated Jun 10, 2022Jun 10, 2022

    • forms

      Public
      Versioned forms for collecting data
      HTML
      •
      MIT License
      •0•0•3•0•Updated Jun 10, 2022Jun 10, 2022

    • DCC

      Public archive
      This repo consists of scripts that are helpful in our DCC efforts in the NF community
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 25, 2022Feb 25, 2022

    • schematic

      Public archive
      Python
      •
      MIT License
      •26•0•0•0•Updated Feb 25, 2022Feb 25, 2022

    • dtexbuilder

      Public
      Utility functions to update the drug-target explorer dataset.
      R
      •
      MIT License
      •0•2•1•0•Updated Dec 6, 2021Dec 6, 2021

    • nf-osi.github.io

      Public archive
      NF Data Portal Docs now lives at help.nf.synapse.org
      1•0•0•0•Updated Aug 26, 2021Aug 26, 2021

    • nf-hackathon-2019

      Public
      Guided data tour for the 2019 NF Hackathon in San Francisco, CA
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •4•2•0•0•Updated Dec 13, 2019Dec 13, 2019