Repositories list

• cbioportal

  Public
  cBioPortal for Cancer Genomics

  Java

  •

  GNU Affero General Public License v3.0

  •487•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• cbioportal-core

  Public
  Externalized cBioPortal Core

  Java

  •15•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• cbioportal-frontend

  Public
  React Frontend of cBioPortal 🎉

  TypeScript

  •

  GNU Affero General Public License v3.0

  •266•0•0•0•Updated Sep 25, 2024Sep 25, 2024

• pythologist

  Public
  Python

  •

  Apache License 2.0

  •2•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• trial_llama-prototype

  Public
  AI trial search engine - Proof of Concept prototype

  Jupyter Notebook

  •0•0•0•0•Updated Jul 17, 2024Jul 17, 2024

• matchminer-ui

  Public
  A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials

  JavaScript

  •

  Other

  •9•8•2•2•Updated Jun 13, 2024Jun 13, 2024

• cbioportal-frontend-documented-ARCHIVE

  Public
  React Frontend of cBioPortal 🎉

  TypeScript

  •

  GNU Affero General Public License v3.0

  •266•0•0•0•Updated Mar 4, 2024Mar 4, 2024

• matchminer-api

  Public
  A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials

  Python

  •12•17•2•0•Updated Dec 5, 2023Dec 5, 2023

• matchengine-V2

  Public
  Open source engine for matching cancer patients to precision medicine clinical trials (V2).

  Python

  •

  Apache License 2.0

  •13•33•0•2•Updated Dec 1, 2023Dec 1, 2023

• pymssql

  Public
  Official home for the pymssql source code.

  Python

  •

  GNU Lesser General Public License v2.1

  •310•0•0•0•Updated Jul 24, 2023Jul 24, 2023

• session-service

  Public
  Java

  •16•0•0•0•Updated Jul 14, 2023Jul 14, 2023

• ksg_web

  Public
  KSG Public Web Site

  SCSS

  •3•2•0•0•Updated Mar 13, 2023Mar 13, 2023

• datahub-study-curation-tools

  Public
  Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.

  Python

  •

  GNU Affero General Public License v3.0

  •15•0•0•0•Updated Feb 24, 2023Feb 24, 2023

• wincrypto

  Public
  Windows Crypto API compatible decryption/encryption for python

  Python

  •

  MIT License

  •22•0•0•0•Updated Dec 11, 2022Dec 11, 2022

• matchminer-setup

  Public
  Shell

  •

  Other

  •0•1•0•0•Updated Oct 12, 2022Oct 12, 2022

• matchminer

  Public
  MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials

  8•39•4•0•Updated Oct 11, 2022Oct 11, 2022

• cbioportal-frontend-ARCHIVE

  Public
  React Frontend of cBioPortal 🎉

  JavaScript

  •

  GNU Affero General Public License v3.0

  •266•1•0•0•Updated Apr 21, 2022Apr 21, 2022

• coleman_kb

  Public
  Python

  •0•0•0•2•Updated May 6, 2021May 6, 2021

• oncotreenx

  Public
  light networkx wrapper around the oncotree data structure

  Python

  •

  MIT License

  •4•0•0•0•Updated Apr 21, 2020Apr 21, 2020

• genome-nexus

  Public
  Interpreting cancer genomics data 🧬

  Java

  •

  MIT License

  •42•0•0•0•Updated Dec 5, 2019Dec 5, 2019

• cbioportal-cloud-devops

  Public
  Python

  •1•3•0•1•Updated Dec 3, 2019Dec 3, 2019

• nginx-prometheus-exporter

  Public
  NGINX Prometheus Exporter for NGINX and NGINX Plus

  Go

  •

  Apache License 2.0

  •341•0•0•0•Updated Feb 26, 2019Feb 26, 2019

• apache_exporter

  Public
  Prometheus exporter for Apache.

  Go

  •

  MIT License

  •146•0•0•0•Updated Feb 25, 2019Feb 25, 2019

• httpd_exporter

  Public
  A apache exporter for prometheus via mod_status.

  Go

  •13•0•0•0•Updated Feb 25, 2019Feb 25, 2019

• mongodb_exporter-1

  Public
  A Prometheus exporter for MongoDB including sharding, replication and storage engines

  Go

  •

  Apache License 2.0

  •423•0•0•0•Updated Feb 22, 2019Feb 22, 2019

• mongodb_exporter

  Public
  MongoDB exporter for prometheus.io

  Go

  •

  MIT License

  •216•0•0•0•Updated Dec 6, 2018Dec 6, 2018

• omero-iviewer

  Public
  An OMERO.web app allowing to view images

  JavaScript

  •30•1•0•0•Updated Oct 1, 2018Oct 1, 2018

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

  Java

  •

  GNU General Public License v2.0

  •102•0•0•0•Updated Aug 13, 2018Aug 13, 2018

• hotspot_logreg

  Public
  Calling hotspots using logistic regression

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 8, 2018Feb 8, 2018

• matchminer-scripts

  Public
  A collection of scripts which may be useful for deploying or utilizing MatchMiner.

  Python

  •3•0•0•0•Updated Nov 21, 2017Nov 21, 2017