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    183 repositories

    • schneider-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•3•3•Updated Oct 4, 2024Oct 4, 2024

    • constantinople-lab-to-nwb

      Public
      NWB Conversion project for the Constantinople lab at NYU Center for Neural Science.
      Jupyter Notebook
      •
      MIT License
      •0•0•4•2•Updated Oct 3, 2024Oct 3, 2024

    • roiextractors

      Public
      Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•11•29•9•Updated Oct 1, 2024Oct 1, 2024

    • example-notebooks

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •17•1•0•0•Updated Oct 1, 2024Oct 1, 2024

    • IBL-to-nwb

      Public
      Conversion of IBL data to NWB format.
      nwb-conversion
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•9•1•Updated Sep 30, 2024Sep 30, 2024

    • neuroconv

      Public
      Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•50•81•32•Updated Sep 30, 2024Sep 30, 2024

    • leifer_lab_to_nwb

      Public
      Conversion scripts for the Leifer lab. Includes the publication Neural signal propagation atlas of Caenorhabditis elegans (Nature, 2023).
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Sep 30, 2024Sep 30, 2024

    • cai-lab-to-nwb

      Public
      NWB Conversion project for the Cai lab
      Python
      •
      MIT License
      •0•0•1•0•Updated Sep 20, 2024Sep 20, 2024

    • dicarlo-lab-to-nwb

      Public
      Python
      •
      MIT License
      •1•0•1•1•Updated Sep 18, 2024Sep 18, 2024

    • hdmf-zarr

      Public
      Zarr I/O backend for HDMF
      Python
      •
      Other
      •6•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • hdmf

      Public
      The Hierarchical Data Modeling Framework
      Python
      •
      Other
      •26•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • dandi_s3_log_parser

      Public
      S3 log parsing for the DANDI Archive.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•6•0•Updated Sep 14, 2024Sep 14, 2024

    • dandi.github.io

      Public
      Website code for DANDI Project
      SCSS
      •14•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • cookiecutter-my-lab-to-nwb-template

      Public
      The standard cookiecutter template for all lab-specific NWB conversions.
      Python
      •
      MIT License
      •1•2•4•1•Updated Sep 6, 2024Sep 6, 2024

    • nwbwidgets

      Public
      Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.
      Python
      •
      Other
      •21•4•0•0•Updated Sep 6, 2024Sep 6, 2024

    • buzsaki-lab-to-nwb

      Public
      nwb
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Sep 6, 2024Sep 6, 2024

    • nwb-schema

      Public
      Data format specification schema for the NWB neurophysiology data format
      Python
      •
      Other
      •16•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • pynwb

      Public
      A Python API for working with Neurodata stored in the NWB Format
      Python
      •
      Other
      •85•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • ndx-binned-spikes

      Public
      NWB extension to store binned spikes (e.g. a non averaged PSTH) with respect to an time events
      Python
      •
      MIT License
      •0•0•1•0•Updated Sep 6, 2024Sep 6, 2024

    • ontology-matching-service

      Public
      Ontology matching service based on LLMs for facilitating the extraction of scientific metadata from ontologies
      Jupyter Notebook
      •
      MIT License
      •0•5•1•0•Updated Sep 3, 2024Sep 3, 2024

    • cohen-u01-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Sep 3, 2024Sep 3, 2024

    • howe-lab-to-nwb

      Public
      NWB Conversion project for the Howe lab at Boston University.
      Jupyter Notebook
      •
      MIT License
      •0•0•2•0•Updated Sep 3, 2024Sep 3, 2024

    • nelson-lab-to-nwb

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Sep 2, 2024Sep 2, 2024

    • higley-lab-to-nwb

      Public
      NWB Conversion project for the Higley lab
      Python
      •
      MIT License
      •0•0•4•0•Updated Aug 29, 2024Aug 29, 2024

    • ndx-ophys-devices

      Public
      This is an NWB extension for storing metadata of devices used in optical experimental setup (microscopy, fiber photometry, optogenetic stimulation etc.)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • ndx-microscopy

      Public
      An enhancement to core NWB schema types related to microscopy data.
      Python
      •
      MIT License
      •0•0•7•1•Updated Aug 28, 2024Aug 28, 2024

    • ndx-structured-behavior

      Public
      An NWB extension for storing structured behavior programs and data, such as from BAABL/BEADL
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Aug 27, 2024Aug 27, 2024

    • .github

      Public
      Company-wide documentation of practices, protocols, policies, and processes.
      0•0•1•0•Updated Aug 27, 2024Aug 27, 2024

    • ndx-subjects

      Public
      An NWB extension for custom species metadata.
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 27, 2024Aug 27, 2024

    • ndx-anatomical-localization

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•1•0•Updated Aug 21, 2024Aug 21, 2024