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    • Repository hosting the Metabolomics Workbench File Status Website. A Third party website containing file status and validation information for all publicly available MW analysis data files.
      HTML
      BSD 3-Clause Clear License
      0400Updated Dec 22, 2024Dec 22, 2024
    • Contains files describing the current status of lab computers and services.
      HTML
      0000Updated Nov 25, 2024Nov 25, 2024
    • Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.
      R
      Other
      11190Updated Oct 31, 2024Oct 31, 2024
    • Information-Content-Informed Kendall-tau in R
      R
      Other
      1650Updated Oct 19, 2024Oct 19, 2024
    • R package for scan-centric, frequency based peak characterization of mass spectrometry
      R
      Other
      00130Updated Oct 18, 2024Oct 18, 2024
    • Visualization methods for omics dataset quality control
      R
      Other
      51080Updated Oct 18, 2024Oct 18, 2024
    • R
      Creative Commons Attribution 4.0 International
      0010Updated Oct 14, 2024Oct 14, 2024
    • Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage.
      Python
      Other
      1470Updated Sep 25, 2024Sep 25, 2024
    • icikt

      Public
      Python
      Other
      0130Updated Sep 10, 2024Sep 10, 2024
    • MESSES

      Public
      MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.
      Python
      Other
      0050Updated Sep 4, 2024Sep 4, 2024
    • Academic Tracker is a package that can search PubMed, Crossref, ORCID, and Google Scholar for publications given a list of authors or publication citations.
      Python
      Other
      51510Updated Sep 4, 2024Sep 4, 2024
    • mwtab

      Public
      The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.
      Python
      BSD 3-Clause Clear License
      21260Updated Jul 17, 2024Jul 17, 2024
    • R
      0010Updated Jun 27, 2024Jun 27, 2024
    • maintaining the information for r-universe
      0000Updated Apr 10, 2024Apr 10, 2024
    • pdb_eda

      Public
      A Python tool for parsing and analyzing electron density maps data available from the worldwide Protein Data Bank
      Python
      Other
      11110Updated Sep 28, 2023Sep 28, 2023
    • R
      Other
      0050Updated Sep 28, 2023Sep 28, 2023
    • kegg_pull

      Public
      Package that facilitates pulling database entries from KEGG via its REST API
      Python
      Other
      1920Updated Aug 30, 2023Aug 30, 2023
    • how much of features / samples do we need to recreate full data correlations
      R
      0000Updated Jul 3, 2023Jul 3, 2023
    • GOcats

      Public
      A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts
      Python
      Other
      2730Updated Jun 16, 2023Jun 16, 2023
    • miagis

      Public
      Generate and validate GIS metadata.
      Python
      Other
      1000Updated Feb 28, 2023Feb 28, 2023
    • Python
      Other
      0010Updated Feb 4, 2023Feb 4, 2023
    • R
      0010Updated Jan 4, 2023Jan 4, 2023
    • R
      1010Updated Jun 2, 2022Jun 2, 2022
    • R
      Other
      0070Updated Apr 22, 2022Apr 22, 2022
    • R
      Other
      0000Updated Mar 16, 2022Mar 16, 2022
    • ctfile

      Public
      Parser for chemical table file (CTfile) a family of text-based chemical file formats (e.g. Molfile, SDfile) that describe molecules and chemical reactions.
      Python
      BSD 3-Clause Clear License
      3700Updated Mar 4, 2022Mar 4, 2022
    • SDAMS

      Public
      Fork of: A Two-Part Semi-Parametric Model for Metabolomics and Proteomics Data
      R
      2000Updated Jan 27, 2022Jan 27, 2022
    • diffexpr

      Public
      Porting DESeq2 and DEXSeq into python via rpy2
      Jupyter Notebook
      MIT License
      21000Updated Dec 1, 2021Dec 1, 2021
    • The nmrstarlib package is a Python library that facilitates reading and writing NMR-STAR formatted files.
      Python
      MIT License
      1510Updated Jun 21, 2021Jun 21, 2021
    • Moiety Modeling implemented in Python
      Python
      Other
      0000Updated Sep 30, 2019Sep 30, 2019