Repositories list

• paperRAG

  Public
  paperRAG is a command-line interface (CLI) tool for populating and querying a database with PDF documents

  Jupyter Notebook

  •0•2•0•0•Updated Sep 24, 2024Sep 24, 2024

• TissueSpecificCancerRisk

  Public
  R

  •0•0•0•0•Updated Sep 4, 2024Sep 4, 2024

• MAVEN

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 1, 2024Sep 1, 2024

• BEACON

  Public
  R

  •0•0•0•0•Updated Aug 15, 2024Aug 15, 2024

• MaPR

  Public
  R

  •

  MIT License

  •0•1•0•0•Updated Aug 14, 2024Aug 14, 2024

• pQTL

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jun 2, 2024Jun 2, 2024

• GetFreeCopy

  Public
  Get Free Copy: A Multi-Repository Search Platform for Biomedical Publications

  open-sciencebiorxivpublication+ 2arxivmedrxiv

  JavaScript

  •

  MIT License

  •2•2•0•0•Updated Apr 16, 2024Apr 16, 2024

• AIScientist

  Public
  AI-Scientist is a playground to build accessible agents for automated research to drive meaningful scientific progress that can benefit the society

  Python

  •

  MIT License

  •1•2•0•0•Updated Apr 1, 2024Apr 1, 2024

• dementia-survival-prediction

  Public
  Machine learning models identify predictive features of patient mortality across dementia types

  Jupyter Notebook

  •

  Other

  •0•2•0•0•Updated Feb 29, 2024Feb 29, 2024

• YoungOnsetCancer

  Public
  Analysis of YoungOnsetCancer

  R

  •

  MIT License

  •1•1•0•0•Updated Jan 23, 2024Jan 23, 2024

• oppti

  Public
  Outlier Protein and Phosphosite Target Identifier

  R

  •1•2•0•0•Updated Mar 20, 2023Mar 20, 2023

• Get-Free-Copy-Extension

  Public
  Chrome Extension to get free copy of research papers from various repositories

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Jan 5, 2023Jan 5, 2023

• lab_website

  Public
  This repository contains the source code for lab pages in https://labs.icahn.mssm.edu/kuanhuanglab (https://ComputationalOmicsLab.Org directs to this ISMMS-hosted address)

  HTML

  •0•0•0•0•Updated Oct 1, 2021Oct 1, 2021

• covid19-diagnosis-prediction

  Public
  A machine-learning based framework for predicting COVID-19 diagnosis

  Jupyter Notebook

  •2•2•0•0•Updated Jul 6, 2021Jul 6, 2021

• SParCS

  Public
  HTML

  •3•2•0•0•Updated Apr 26, 2021Apr 26, 2021

• IRAG-2020

  Public
  MIT License

  •0•0•0•0•Updated Apr 3, 2020Apr 3, 2020

• TCGASecondaryPredisposition

  Public
  Discover secondary genetic predisposition in 10K cancer cases

  R

  •0•0•0•0•Updated Jul 3, 2019Jul 3, 2019

• AeQTL

  Public
  Python

  •

  MIT License

  •3•4•0•0•Updated Jul 1, 2019Jul 1, 2019

• GermlineSomatic

  Public
  R

  •0•0•0•0•Updated May 27, 2019May 27, 2019

• CORE

  Public
  0•1•0•0•Updated May 24, 2019May 24, 2019

• AncestralCancerPredisposition

  Public
  Investigate predisposing variants across ancestries.

  R

  •0•0•0•0•Updated May 1, 2019May 1, 2019

• ImmuneProteome

  Public
  Define new immune subtypes of a cancer. Find key proteins distinguishing them.

  R

  •

  MIT License

  •0•0•0•0•Updated Apr 7, 2019Apr 7, 2019

• ImmunotherapyGenomicBiomarkers

  Public
  0•1•0•0•Updated Feb 28, 2019Feb 28, 2019

• BRCAProteomicsNetwork

  Public
  R

  •0•0•0•0•Updated Feb 14, 2019Feb 14, 2019

• SequenceVariantCallEvaluation

  Public
  Evaluate coverage and sequence variant calls and contribution to their variations from potential technical and biological effects.

  R

  •

  MIT License

  •0•0•0•0•Updated Dec 4, 2018Dec 4, 2018

• IncidenceDriverModel

  Public
  R

  •0•0•0•0•Updated Nov 9, 2018Nov 9, 2018