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Flesh out ion channel to cell spreadsheet with presence of specific channels in muscle cells #311

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slarson opened this issue Jul 8, 2017 · 3 comments
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slarson commented Jul 8, 2017

The linked spreadsheet contains mappings from named ion channels to a adult neurons. A similar mapping should be generated for muscle cells based on the text descriptions already given in the spreadsheet.

cc: @shubhsingh594

Spreadsheet

@slarson slarson self-assigned this Jul 8, 2017
@slarson slarson added the ready label Jul 8, 2017
@slarson slarson added in progress and removed ready labels Jul 17, 2017
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slarson commented Aug 3, 2017

Progress is here

So far only neurons -- muscles next.

cc: @shubhsingh594

@slarson slarson changed the title Convert Cell to Ion Channel Spreadsheet into a more standard spreadsheet form Flesh out cell to ion channel spreadsheet with scores for presence of specific channels in cells Aug 16, 2017
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slarson commented Aug 16, 2017

@HebaF Have a look at the sheet called "Ion Channel To Neuron". We want to do the same thing in the "Ion Channel To Body Muscle" tab. Currently the formulas in columns K-DA are all zeros, but some of them should return 1s. We need to fix the formula that is used to make this happen.

Let's chat more about what that means on Slack -- I realize you won't have all the info quite yet.

@mwatts15 mwatts15 changed the title Flesh out cell to ion channel spreadsheet with scores for presence of specific channels in cells Flesh out cell to ion channel spreadsheet with scores for presence of specific channels in muscle cells Jun 21, 2018
@mwatts15 mwatts15 changed the title Flesh out cell to ion channel spreadsheet with scores for presence of specific channels in muscle cells Flesh out ion channel to cell spreadsheet with presence of specific channels in muscle cells Jun 21, 2018
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Updated to describe the task as it currently exists. AFAIK, no one has actively been working on it.

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