From 3332ccddf0e54554804bb7a27f9ca389ad0bef45 Mon Sep 17 00:00:00 2001 From: <> Date: Tue, 10 Oct 2023 15:45:47 +0000 Subject: [PATCH] Deployed f8ed420 with MkDocs version: 1.4.2 --- components/dataset/_dataset/index.html | 4 +- .../datasource/finngen/study_index/index.html | 58 ++++------ components/step/finngen/index.html | 102 +++++++++++++++--- components/step/ukbiobank/index.html | 8 +- search/search_index.json | 2 +- sitemap.xml.gz | Bin 227 -> 227 bytes 6 files changed, 117 insertions(+), 57 deletions(-) diff --git a/components/dataset/_dataset/index.html b/components/dataset/_dataset/index.html index 17b955514..b164055b2 100644 --- a/components/dataset/_dataset/index.html +++ b/components/dataset/_dataset/index.html @@ -219,7 +219,7 @@ """Remove the persisted DataFrame from memory.""" self.df = self._df.unpersist() return self -
df: DataFrame
property
writable
Dataframe included in the Dataset.
schema: StructType
property
Dataframe expected schema.
__post_init__()
Post init.
src/otg/dataset/dataset.py
27
+ |
df: DataFrame
writable
property
Dataframe included in the Dataset.
schema: StructType
property
Dataframe expected schema.
__post_init__()
Post init.
src/otg/dataset/dataset.py
27 28 29 |
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get_schema()
classmethod
abstractmethod
Abstract method to get the schema. Must be implemented by child classes.
src/otg/dataset/dataset.py
47
+ |
get_schema()
abstractmethod
classmethod
Abstract method to get the schema. Must be implemented by child classes.
src/otg/dataset/dataset.py
47 48 49 50 diff --git a/components/datasource/finngen/study_index/index.html b/components/datasource/finngen/study_index/index.html index 93ff16d4f..26aaa9d2c 100644 --- a/components/datasource/finngen/study_index/index.html +++ b/components/datasource/finngen/study_index/index.html @@ -61,11 +61,7 @@ 74 75 76 -77 -78 -79 -80 -81 |
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from_source(finngen_studies, finngen_release_prefix, finngen_sumstat_url_prefix, finngen_sumstat_url_suffix)
classmethod
This function ingests study level metadata from FinnGen.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
finngen_studies | DataFrame | FinnGen raw study table | required |
finngen_release_prefix | str | Release prefix pattern. | required |
finngen_sumstat_url_prefix | str | URL prefix for summary statistics location. | required |
finngen_sumstat_url_suffix | str | URL prefix suffix for summary statistics location. | required |
Returns:
Name | Type | Description |
---|---|---|
FinnGenStudyIndex | FinnGenStudyIndex | Parsed and annotated FinnGen study table. |
src/otg/datasource/finngen/study_index.py
27
+ |
from_source(finngen_studies, finngen_release_prefix, finngen_summary_stats_url_prefix, finngen_summary_stats_url_suffix)
classmethod
This function ingests study level metadata from FinnGen.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
finngen_studies | DataFrame | FinnGen raw study table | required |
finngen_release_prefix | str | Release prefix pattern. | required |
finngen_sumstat_url_prefix | str | URL prefix for summary statistics location. | required |
finngen_sumstat_url_suffix | str | URL prefix suffix for summary statistics location. | required |
Returns:
Name | Type | Description |
---|---|---|
FinnGenStudyIndex | FinnGenStudyIndex | Parsed and annotated FinnGen study table. |
src/otg/datasource/finngen/study_index.py
27 28 29 30 @@ -183,17 +175,13 @@ 74 75 76 -77 -78 -79 -80 -81 |
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