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ModeOfInheritance filter #6

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j-coll opened this issue Nov 23, 2018 · 1 comment
Open

ModeOfInheritance filter #6

j-coll opened this issue Nov 23, 2018 · 1 comment
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spark-analysis New Spark analysis
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v1.0.0

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j-coll commented Nov 23, 2018 •
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Mode of inheritance was implemented in Biodata time ago, and it's being used already in OpenCGA. We shall create a way of filtering by ModeOfInheritance.

This won't be implemented as an stand alone UDF, but as a Transformer.

Params

  • study
  • family
  • modeOfInheritance
  • incompletePenetrance
@j-coll j-coll added the spark-analysis New Spark analysis label Nov 23, 2018
@j-coll j-coll added this to the v1.0.0 milestone Nov 23, 2018
@j-coll j-coll self-assigned this Nov 23, 2018
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j-coll commented Nov 23, 2018

Should this transformer allow to filter the pseudoautosomical regions for xLinked and yLinked modes of inheritance?

j-coll added a commit that referenced this issue Nov 23, 2018
@j-coll
spark: Add ModeOfInheritance transformer #6
fb513bc
j-coll added a commit that referenced this issue Nov 27, 2018
@j-coll
spark: Fix parse of ModeOfInheritance. #6
f737981
imedina pushed a commit that referenced this issue Feb 1, 2019
@roldanx
Merge pull request #6 from roldanx/issue-2
81e2102 
Issue 2
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