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Implementation of the transmission disequilibrium test (TDT) analysis #19

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jtarraga opened this issue Sep 4, 2019 · 0 comments
Open

Implementation of the transmission disequilibrium test (TDT) analysis #19

jtarraga opened this issue Sep 4, 2019 · 0 comments
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spark-analysis New Spark analysis

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jtarraga commented Sep 4, 2019 •
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Oskar should offer family-based association analysis running on Spark framework and taking Parquet files as input. The most-used family-based association analysis is the transmission disequilibrium test (TDT) given case/control phenotypes and pedigree information.

The Spark TDT implementation will follow the Oskar Analysis and AnalysisExecutor schema and rely on the TDT transformer already implemented in Oskar.
@jtarraga jtarraga added the spark-analysis New Spark analysis label Sep 4, 2019
@jtarraga jtarraga self-assigned this Sep 4, 2019
@jtarraga jtarraga changed the title Implementation of the transmission disequilibrium test analysis Implementation of the transmission disequilibrium test (TDT) analysis Sep 4, 2019
jtarraga added a commit that referenced this issue Sep 4, 2019
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spark: implementation of the transmission disequilibrium test (TDT) a…
f2ba425 
…nalysis, #19
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