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Implement GWAS analysis based on Spark/Parquet #17

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jtarraga opened this issue Aug 30, 2019 · 0 comments
Open

Implement GWAS analysis based on Spark/Parquet #17

jtarraga opened this issue Aug 30, 2019 · 0 comments
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spark-analysis New Spark analysis

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An important analysis that Oskar should offer is the GWAS analysis based on Spark framework and taking Parquet files as input. The GWAS implementation relies on Fisher and ChiSquare dataset transformer already implemented in Oskar.

The implementation will follow the Analysis and AnalysisExecutor schema.
@jtarraga jtarraga added the spark-analysis New Spark analysis label Aug 30, 2019
@jtarraga jtarraga self-assigned this Aug 30, 2019
@jtarraga jtarraga changed the title Implement GWA analysis based on Spark/Parquet Implement GWAS analysis based on Spark/Parquet Aug 30, 2019
jtarraga added a commit that referenced this issue Aug 30, 2019
@jtarraga
spark: implement GWAS analysis, #17
bfa03a5
jtarraga added a commit that referenced this issue Oct 3, 2019
@jtarraga
analysis: improve GWAS analysis implementation, #17
c6c0875
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