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Support for rvtests, a third-party analysis tool for rare variants. #125

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jtarraga opened this issue Jan 19, 2017 · 0 comments
Open

Support for rvtests, a third-party analysis tool for rare variants. #125

jtarraga opened this issue Jan 19, 2017 · 0 comments
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jtarraga commented Jan 19, 2017 •
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The project should support third-party analysis tools, such as rvtests, plink,...

Some rvtests executions takes over several hours, this time should be reduced significatly by running on a Hadoop cluster and using Spark engine.
@jtarraga jtarraga self-assigned this Jan 19, 2017
jtarraga added a commit that referenced this issue Jan 23, 2017
@jtarraga
tools: RvTests tests, #125
0bc165e
jtarraga added a commit that referenced this issue Jan 23, 2017
@jtarraga
tools: rvtests implentation, #125
c7ffbf2
jtarraga added a commit that referenced this issue Jan 27, 2017
@jtarraga
tools: improve spark code for the rvtests analysis, #125
3abc247
jtarraga added a commit that referenced this issue Sep 13, 2017
@jtarraga
analysis: major improvements in rvtests and plink analsys #125 #128
fb84932
jtarraga added a commit that referenced this issue Sep 20, 2017
@jtarraga
app: get the RvTest binary path from the command line #125
360b56d
jtarraga added a commit that referenced this issue Sep 20, 2017
@jtarraga
analysis: minor changes in RvTests analysis #125
b9d862a
jtarraga added a commit that referenced this issue Oct 19, 2017
@jtarraga
analysis: update analysis/wrappers by using configuration file #125 #128
334b9de
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