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Load variant data into HBase using MR #11

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mh11 opened this issue May 21, 2015 · 0 comments
Open

Load variant data into HBase using MR #11

mh11 opened this issue May 21, 2015 · 0 comments
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enhancement task
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v0.6.0

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mh11 commented May 21, 2015

Variant files in avro format are stored in the hadoop cluster (hdfs).
Load these files into HBase using map reduce.
@mh11 mh11 self-assigned this May 21, 2015
@mh11 mh11 added this to the v0.6.0 milestone May 21, 2015
mh11 pushed a commit that referenced this issue May 21, 2015
Basic avro -> HBase loader for #11
ba7fceb 
First implementation to load variant information into HBase from avro.
mh11 pushed a commit that referenced this issue May 21, 2015
Variant to HBase load: allow to specify hadoop cluster
2fc0ec4 
Use output option to specify hadoop cluster url (issue #11)
mh11 pushed a commit that referenced this issue Jun 30, 2015
hbase: Load into different tables and full expansion of the gVCFs (#11 …
d48e5d3 
…#18 #19)
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