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Currently, the 'alginment stats' command line outputs stats in JSON format. In order to make more understable the stats, 'alignment stats' should output the stats in plain text format. A new optional parameter should be added, e.g.: --text:
Currently, the 'alginment stats' command line outputs stats in JSON format. In order to make more understable the stats, 'alignment stats' should output the stats in plain text format. A new optional parameter should be added, e.g.: --text:
./build/bin/hpg-bigdata-local.sh alignment stats --i test.bam.avro --text
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