diff --git a/about/index.md b/about/index.md index 99713ee8..75c6c88e 100644 --- a/about/index.md +++ b/about/index.md @@ -58,7 +58,7 @@ for working with NGFF data. The following pages are intended to provide an overview of the available resources in the NGFF space: * [Data Resources](../data/index.md): List of data repositories where OME-Zarr data can be found. -* [Tools](../tools/index.rst): GUIs and libraries that can be used for accessing OME-Zarr formatted data. +* [Tools](../tools/index.md): GUIs and libraries that can be used for accessing OME-Zarr formatted data. * [Publications](../publications/index.md): List of publications referencing OME-NGFF or publishing datasets in OME-Zarr. diff --git a/tools/index.md b/tools/index.md index b3b0d5d0..aa2412e6 100644 --- a/tools/index.md +++ b/tools/index.md @@ -79,6 +79,12 @@ A GUI application for conversion of bioimage formats into OME-NGFF (Next-Generat A tool for converting multi-terabyte stacks of images into a multiscale OME-NGFF Zarr. +### BatchConvert + + +A Nextflow based command-line tool that wraps bioformats2raw for parallelised conversion of image data collections to OME-Zarr. + + ## Libraries for reading/writing OME-Zarr files Various libraries for reading/writing OME-Zarr files in Python were evaluated as part of the BioVisionCenter "Next generation bioimage analysis workflows hackathon" 2023 in Zurich, Switzerland: https://github.com/jwindhager/ome-ngff-readers-writers/.