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zacharyburnett edited this page Apr 25, 2022 · 5 revisions

CoastalApp

tests build license

ESMF application for building a NUOPC / NEMS application coupling circulation models (ADCIRC, SCHISM) with forcing models (WW3, NWM) or even file forcings (ATMESH, WW3DATA).

ADC-WW3-NWM-NEMS is an ESMF application developed as part of the Coastal Act coupling project to determine wind versus water percentage loss caused by a Named Storm Event.

git clone --recursive https://github.com/noaa-ocs-modeling/CoastalApp
cd CoastalApp

Requirements

installing ParMETIS for WW3

Using unstructured WW3 requires an installation of ParMETIS for domain decomposition.

  1. download the code here
  2. build ParMETIS 
    module purge
module load intel impi
setenv CFLAGS -fPIC
make config cc=mpiicc cxx=mpiicc prefix=/path/to/your/parmetis/ | & tee config.out-rr
make install | & tee make-install.out-rr
    This adds libparmetis.a under /path/to/your/parmetis/lib/libparmetis.a.
  3. set the path to ParMETIS 
    setenv METIS_PATH /path/to/your/parmetis

Organization / Responsibility

NEMS application implementing ESMF / NUOPC coupling

ESMF / NUOPC cap for ADCIRC model

ESMF / NUOPC cap for FVCOM model

ESMF / NUOPC cap for SCHISM model

ESMF / NUOPC cap for WW3 model

PaHM model and ESMF / NUOPC cap for PaHM model

ATMESH data component and ESMF / NUOPC cap for ATMESH data component

ESMF / NUOPC cap for NWM model

Compilation

This section contains some generic instructions of how to build the NEMS application. The contents of this section will change soon.

./build.sh --help

The following example builds NEMS.x with ADCIRC, ATMESH, and WW3DATA, using variables / modules from the Hera environment, compiling with the Intel compiler, and cleaning before building.

./build.sh --component "ADCIRC ATMESH WW3DATA" --plat hera --compiler intel --clean -2

Components

  • --component can be any combination of
    • ADCIRC
    • ATMESH
    • WW3 / WW3DATA
    • NWM
./build.sh --component "ADCIRC WW3" --plat hera --compiler intel --clean -2 
./build.sh --component "SCHISM" --plat orion --compiler intel --clean -2

Platforms

  • --plat can be one of
    • hera
    • stampede
    • wcoss
    • orion
    • jet
    • gaea
    • cheyenne
    • linux
    • macosx
    • macports

For MacOS running MacPorts, use the macports option.

./build.sh --component "SCHISM" --plat hera --compiler intel --clean -2
./build.sh --component "SCHISM" --plat orion --compiler intel --clean -2

Compiler

  • --compiler can be one of
    • intel
    • gnu
    • pgi
./build.sh --component "SCHISM" --compiler gnu --plat macports
./build.sh --component "SCHISM" --compiler intel --plat hera

Clean

  • --clean is optional, and can be one of
    • (make clean and exit)
    • 1 (make clean and exit)
    • 2 (make clobber and exit)
    • -1 (make clean and build)
    • -2 (make clobber and build)
./build.sh --component "SCHISM" --compiler intel --plat hera --clean
./build.sh --component "SCHISM" --compiler intel --plat hera --clean -1

Contributing

Feel free to fork this repository and create a pull request with contributions.

adding a new platform / compiler to compilation script

Environment files are stored in modulefiles/ with the filename envmodules_<COMPILER>.<PLATFORM>

To compile in your own system you should create a similar file, then run build.sh to compile.

Collaboration

To collaborate and contribute to this repository follow below instructions:

  1. go to https://github.com/noaa-ocs-modeling/CoastalApp
  2. create a fork (click Fork on the upper right corner), and fork to your account.
  3. clone your forked repository 
    git clone --recursive https://github.com/<ACCOUNT>/CoastalApp
  4. edit the files locally 
    git status
  5. commit changes 
    git commit -a -m "describe what you changed"
  6. push your changes to GitHub 
    git push
  7. enter your GitHub username/password if asked
  8. create a pull request with descriptions of changes at 
    https://github.com/noaa-ocs-modeling/CoastalApp/compare/<BRANCH>...<ACCOUNT>:<BRANCH>

Citations

Moghimi, S., Van der Westhuysen, A., Abdolali, A., Myers, E., Vinogradov, S., 
   Ma, Z., Liu, F., Mehra, A., & Kurkowski, N. (2020). Development of an ESMF 
   Based Flexible Coupling Application of ADCIRC and WAVEWATCH III for High 
   Fidelity Coastal Inundation Studies. Journal of Marine Science and 
   Engineering, 8(5), 308. https://doi.org/10.3390/jmse8050308

Moghimi, S., Vinogradov, S., Myers, E. P., Funakoshi, Y., Van der Westhuysen, 
   A. J., Abdolali, A., Ma, Z., & Liu, F. (2019). Development of a Flexible 
   Coupling Interface for ADCIRC model for Coastal Inundation Studies. NOAA 
   Technical Memorandum, NOS CS(41). 
   https://repository.library.noaa.gov/view/noaa/20609/

Moghimi, S., Westhuysen, A., Abdolali, A., Myers, E., Vinogradov, S., Ma, Z., 
   Liu, F., Mehra, A., & Kurkowski, N. (2020). Development of a Flexible 
   Coupling Framework for Coastal Inundation Studies. 
   https://arxiv.org/abs/2003.12652
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