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Workshop IV - De-novo assembly

  • The slides to this Workshop can be found here

  • The recordings of the Workshop can be found on the NHM intranet under I:\Public\mkapun\FrontiersInMolecularSystematics\Workshop_IV_DeNovoAssembly

  • check out the previous workshop for instructions on how to work on the Phyloserver

  • In your home directory on the server, please clone this repository by typing the following command in your commandline using Visual Studio Code

git clone https://github.com/nhmvienna/Workshop_IV_DeNovoAssembly
  • Then, follow the instruction in shell/assembly_pipeline.sh

For a fully automated Pipeline, see here: https://github.com/nhmvienna/AutDeNovo