diff --git a/README.md b/README.md index 60d9447..dd2b43d 100755 --- a/README.md +++ b/README.md @@ -15,7 +15,7 @@ implemented with Nextflow. 1. If you don't have it already install Docker in your computer. Read more [here](https://docs.docker.com/). -2. Install Nextflow (version 23.04.0 or later): +2. Install Nextflow (version 23.10.0 or later): curl -s https://get.nextflow.io | bash diff --git a/main.nf b/main.nf index 0b72c92..1af42a0 100755 --- a/main.nf +++ b/main.nf @@ -11,15 +11,6 @@ * defined by the Mozilla Public License, v. 2.0. */ -/* - * Proof of concept of a RNAseq pipeline implemented with Nextflow - * - * Authors: - * - Paolo Di Tommaso - * - Emilio Palumbo - * - Evan Floden - */ - /* * enables modules */ @@ -55,4 +46,3 @@ workflow { RNASEQ( params.transcriptome, read_pairs_ch ) MULTIQC( RNASEQ.out, params.multiqc ) } - diff --git a/modules/multiqc/main.nf b/modules/multiqc/main.nf index a476ded..6457096 100644 --- a/modules/multiqc/main.nf +++ b/modules/multiqc/main.nf @@ -5,11 +5,11 @@ process MULTIQC { publishDir params.outdir, mode:'copy' input: - path('*') - path(config) + path '*' + path 'config' output: - path('multiqc_report.html'), emit: report + path 'multiqc_report.html', emit: report script: """