diff --git a/main.nf b/main.nf index 77d2d70..0b72c92 100755 --- a/main.nf +++ b/main.nf @@ -56,9 +56,3 @@ workflow { MULTIQC( RNASEQ.out, params.multiqc ) } -/* - * completion handler - */ -workflow.onComplete { - log.info ( workflow.success ? "\nDone! Open the following report in your browser --> $params.outdir/multiqc_report.html\n" : "Oops .. something went wrong" ) -} diff --git a/modules/fastqc/main.nf b/modules/fastqc/main.nf index cd58cbb..b9009cd 100644 --- a/modules/fastqc/main.nf +++ b/modules/fastqc/main.nf @@ -9,7 +9,7 @@ process FASTQC { tuple val(sample_id), path(reads) output: - path "fastqc_${sample_id}_logs" + path "fastqc_${sample_id}_logs", emit: logs script: """ diff --git a/modules/multiqc/main.nf b/modules/multiqc/main.nf index a390282..a476ded 100644 --- a/modules/multiqc/main.nf +++ b/modules/multiqc/main.nf @@ -9,7 +9,7 @@ process MULTIQC { path(config) output: - path('multiqc_report.html') + path('multiqc_report.html'), emit: report script: """