scKirby 0.1.5

New features

Move more functions from phenomix --> scKirby:
- compute_cor --> calc_cor
- compute_snn
- create_DimReducObject
- get_cor
- has_graph
- infer_graph_name --> infer_graph_key
- normalise
- yeojohnson
- is_installed
dict_class
- Add "Graph" to "matrix" class.
New exported functions:
- set_obsp
- to_delayedarray

scKirby 0.1.4

New features

Rename get_data --> get_x to align with anndata nomenclature and avoid conflicts with piggyback-oriented functions.
is_class
- Add new classes: "matrix_strict", "matrix_sparse", "delayed_array"

get_x
- Add new args layer and assay
New funcs:
- get_obs_names
- get_var_names
- mofa_to_dimreduc
get_obsm: can now handle MOFA models.
get_varm: can now handle MOFA models.
get_obs/ get_var can now take matrices.
is_class:
- Now recognises class "matrix_list"

scKirby 0.1.3

New features

anndata_to_ctd:
- New function to create CTD by chunking anndata obj.
seurat_to_anndata
- Add support for anndataR method.

Bug fixes

map_data
- Change default: as_sparse=TRUE

scKirby 0.1.2

New features

Move scNLP::seurat_pipeline --> scKirby::process_seurat
- New subfunction calc_specificity

scKirby 0.1.1

Implemented rworkflows
Added a NEWS.md file to track changes to the package.