You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
# Testing with Hello world for the moment. #!/usr/bin/env Rscripthello_world<-function(){
print('Hello World!')
}
hello_world()
Data
(If possible, upload a small sample of your data so that we can reproduce the bug on our end. If that's not possible, please at least include a screenshot of your data and other relevant details.)
3. Session info
(Add output of the R function utils::sessionInfo() below. This helps us assess version/OS conflicts which could be causing bugs.)
# Paste utils::sessionInfo() output
I am going to modify parameters of use_workflow to see if I can get steps other than code coverage or telemetry working.
The text was updated successfully, but these errors were encountered:
1. Bug description
I am trying to integrate in a basic R project, I have set GITHUB_TOKEN secret in Github, and left everything else as default in rworkflows.yml file.
Console output
I get this for all 3 VM images.
Current runner version: '2.319.1'
Operating System
Runner Image
Runner Image Provisioner
GITHUB_TOKEN Permissions
Secret source: Actions
Prepare workflow directory
Prepare all required actions
Getting action download info
Download action repository 'neurogenomics/rworkflows@master' (SHA:30139680368b7f882d1a3bf83c2a3a87db58e632)
Getting action download info
Error: Unable to resolve action. Repository not found: runforesight/workflow-telemetry-action
Expected behaviour
I was assuming atleast the container would download and run and awaiting any of my scripts to get flagged
2. Reproducible example
Code
rworkflows.yml under .github/workflows folder
name: rworkflows
'on':
push:
branches:
- master
- main
- devel
- RELEASE_**
pull_request:
branches:
- master
- main
- devel
- RELEASE_**
jobs:
rworkflows:
permissions: write-all
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
container: ${{ matrix.config.cont }}
strategy:
fail-fast: ${{ false }}
matrix:
config:
- os: ubuntu-latest
bioc: devel
r: auto
cont: ghcr.io/bioconductor/bioconductor_docker:RELEASE_3_18
rspm: ~
- os: macOS-latest
bioc: release
r: auto
cont: ~
rspm: ~
- os: windows-latest
bioc: release
r: auto
cont: ~
rspm: ~
steps:
- uses: neurogenomics/rworkflows@master
with:
run_bioccheck: ${{ false }}
run_rcmdcheck: ${{ true }}
as_cran: ${{ true }}
run_vignettes: ${{ true }}
has_testthat: ${{ true }}
run_covr: ${{ true }}
run_pkgdown: ${{ true }}
has_runit: ${{ false }}
has_latex: ${{ false }}
GITHUB_TOKEN: ${{ secrets.GH_Token }}
run_docker: ${{ false }}
DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }}
runner_os: ${{ runner.os }}
cache_version: cache-v1
docker_registry: ghcr.io
Data
(If possible, upload a small sample of your data so that we can reproduce the bug on our end. If that's not possible, please at least include a screenshot of your data and other relevant details.)
3. Session info
(Add output of the R function
utils::sessionInfo()
below. This helps us assess version/OS conflicts which could be causing bugs.)I am going to modify parameters of use_workflow to see if I can get steps other than code coverage or telemetry working.
The text was updated successfully, but these errors were encountered: