NAMESPACE

# Generated by roxygen2: do not edit by hand

export(adjust_zstat_in_genesOut)
export(calculate_celltype_associations)
export(calculate_celltype_enrichment_limma)
export(calculate_conditional_celltype_associations)
export(calculate_conditional_celltype_enrichment_limma)
export(calculate_conditional_geneset_enrichment)
export(calculate_geneset_enrichment)
export(celltype_associations_pipeline)
export(compare_trait_enrichments)
export(create_DT)
export(drop_genes_within_mhc)
export(format_sumstats_for_magma)
export(get_ctd)
export(get_driver_genes)
export(get_example_gwas)
export(get_genome_ref)
export(get_genomebuild_for_sumstats)
export(get_magma_paths)
export(import_magma_files)
export(infer_ctd_species)
export(infer_geneset_species)
export(list_snps_to_genes_files)
export(load_magma_results_file)
export(magma_install)
export(magma_run)
export(magma_tileplot)
export(magma_uninstall)
export(map_snps_to_genes)
export(merge_magma_results)
export(merge_results)
export(plot_celltype_associations)
export(prepare_quantile_groups)
export(results_heatmap)
export(standardise.sumstats.column.headers)
importFrom(EWCE,fix_celltype_names)
importFrom(EWCE,standardise_ctd)
importFrom(Matrix,t)
importFrom(MungeSumstats,get_genome_builds)
importFrom(R.utils,gunzip)
importFrom(XML,free)
importFrom(XML,htmlParse)
importFrom(XML,xpathSApply)
importFrom(data.table,":=")
importFrom(data.table,data.table)
importFrom(data.table,frank)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,rbindlist)
importFrom(data.table,setcolorder)
importFrom(data.table,setkey)
importFrom(data.table,setnames)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,setdiff)
importFrom(ggdendro,dendro_data)
importFrom(ggdendro,segment)
importFrom(ggdendro,theme_dendro)
importFrom(gh,gh_token)
importFrom(httr,GET)
importFrom(httr,content)
importFrom(httr,stop_for_status)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTable)
importFrom(lme4,lmer)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,show)
importFrom(orthogene,convert_orthologs)
importFrom(orthogene,infer_species)
importFrom(orthogene,map_genes)
importFrom(parallel,mclapply)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(stats,anova)
importFrom(stats,as.formula)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,p.adjust)
importFrom(stats,pnorm)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,setNames)
importFrom(stringr,str_split)
importFrom(tools,R_user_dir)
importFrom(utils,download.file)
importFrom(utils,read.table)
importFrom(utils,unzip)
importFrom(utils,write.table)