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Add output report #2

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Tomrrr1 opened this issue Feb 7, 2024 · 0 comments

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Tomrrr1 commented Feb 7, 2024

The main functions (conservative_idr, optimal_idr etc.) should return a short output report detailing basic summary metrics. These include

Number of peaks called on each replicate, along with the peak call command
Number of peaks to pass the IDR threshold.

The report should also contain some simple plots. Ideas here https://www.bioconductor.org/packages/release/bioc/vignettes/idr2d/inst/doc/idr1d.html and https://hbctraining.github.io/Intro-to-ChIPseq/lessons/07_handling-replicates-idr.html

Tomrrr1 self-assigned this

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