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Hi, I followed this set up
conda create -n tf2.3 python=3.7
conda activate tf2.3
conda install -c conda-forge cudatoolkit=10.1 cudnn=7.6
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CONDA_PREFIX/lib/ then installed the requirements sucessfully but while running AIONER, I am getting this error. Please help resolving this issue as soon as possible. Thank you for this advance tool
AIONER-main$ python src/AIONER_Run.py -i ../example/input/ -m ../pretrained_models/AIONER/Bioformer-softmax-AIONER.h5 -v ../vocab/AIO_label.vocab -e ALL -o ../example/output/
2024-05-31 16:20:56.266464: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcudart.so.10.1
2024-05-31 16:20:58.052726: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcuda.so.1
2024-05-31 16:20:58.093898: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1716] Found device 0 with properties:
pciBusID: 0000:31:00.0 name: NVIDIA GeForce RTX 4090 computeCapability: 8.9
coreClock: 2.52GHz coreCount: 128 deviceMemorySize: 23.64GiB deviceMemoryBandwidth: 938.86GiB/s
2024-05-31 16:20:58.093962: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcudart.so.10.1
2024-05-31 16:20:58.096369: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcublas.so.10
2024-05-31 16:20:58.098784: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcufft.so.10
2024-05-31 16:20:58.099218: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcurand.so.10
2024-05-31 16:20:58.101683: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcusolver.so.10
2024-05-31 16:20:58.102992: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcusparse.so.10
2024-05-31 16:20:58.108054: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcudnn.so.7
2024-05-31 16:20:58.108705: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1858] Adding visible gpu devices: 0
Num GPUs Available: 1
Traceback (most recent call last):
File "src/AIONER_Run.py", line 27, in
import stanza
File "/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/stanza/init.py", line 1, in
from stanza.pipeline.core import Pipeline
File "/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/stanza/pipeline/core.py", line 20, in
from stanza.pipeline.langid_processor import LangIDProcessor
File "/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/stanza/pipeline/langid_processor.py", line 5, in
import emoji
File "/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/emoji/init.py", line 47, in
from emoji.core import *
File "/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/emoji/core.py", line 12, in
from typing_extensions import Literal, Match, TypedDict
ImportError: cannot import name 'Match' from 'typing_extensions' (/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/typing_extensions.py)
The text was updated successfully, but these errors were encountered:
Hi, this issue is likely due to an incompatibility between the versions of the emoji and typing_extensions libraries installed in your environment, but not AIONER. Could you list the versions of the libraries in your environment?
Hi, I followed this set up
conda create -n tf2.3 python=3.7
conda activate tf2.3
conda install -c conda-forge cudatoolkit=10.1 cudnn=7.6
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CONDA_PREFIX/lib/
then installed the requirements sucessfully but while running AIONER, I am getting this error. Please help resolving this issue as soon as possible. Thank you for this advance tool
AIONER-main$ python src/AIONER_Run.py -i ../example/input/ -m ../pretrained_models/AIONER/Bioformer-softmax-AIONER.h5 -v ../vocab/AIO_label.vocab -e ALL -o ../example/output/
2024-05-31 16:20:56.266464: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcudart.so.10.1
2024-05-31 16:20:58.052726: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcuda.so.1
2024-05-31 16:20:58.093898: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1716] Found device 0 with properties:
pciBusID: 0000:31:00.0 name: NVIDIA GeForce RTX 4090 computeCapability: 8.9
coreClock: 2.52GHz coreCount: 128 deviceMemorySize: 23.64GiB deviceMemoryBandwidth: 938.86GiB/s
2024-05-31 16:20:58.093962: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcudart.so.10.1
2024-05-31 16:20:58.096369: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcublas.so.10
2024-05-31 16:20:58.098784: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcufft.so.10
2024-05-31 16:20:58.099218: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcurand.so.10
2024-05-31 16:20:58.101683: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcusolver.so.10
2024-05-31 16:20:58.102992: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcusparse.so.10
2024-05-31 16:20:58.108054: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library libcudnn.so.7
2024-05-31 16:20:58.108705: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1858] Adding visible gpu devices: 0
Num GPUs Available: 1
Traceback (most recent call last):
File "src/AIONER_Run.py", line 27, in
import stanza
File "/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/stanza/init.py", line 1, in
from stanza.pipeline.core import Pipeline
File "/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/stanza/pipeline/core.py", line 20, in
from stanza.pipeline.langid_processor import LangIDProcessor
File "/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/stanza/pipeline/langid_processor.py", line 5, in
import emoji
File "/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/emoji/init.py", line 47, in
from emoji.core import *
File "/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/emoji/core.py", line 12, in
from typing_extensions import Literal, Match, TypedDict
ImportError: cannot import name 'Match' from 'typing_extensions' (/home/khyati/anaconda3/envs/tf2.3/lib/python3.7/site-packages/typing_extensions.py)
The text was updated successfully, but these errors were encountered: