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CHANGELOG.md

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Change Log

All notable changes to this project will be documented in this file, following the suggestions of Keep a CHANGELOG. This project adheres to Semantic Versioning for its most widely used - and defacto - public interfaces.

[Unreleased]

[v3.3.2] - 2024-11-25

  • Fixed Domain Annotations crashing when no domains available

[v3.3.1] - 2024-11-13

  • Mol* core dependency updated to 4.8.0
    • Fixes iOS volume rendering bug

[v3.3.0] - 2024-08-22

  • Mol* core dependency updated to 4.5.0
    • Solves the bug with Export Models
  • Use BCIF files for AlphaFold models (unless encoding: 'cif')
  • Added options leftPanel, rightPanel, logPanel, tabs
  • Option hideCanvasControls accepts "trajectory" value (for multi-model structures)
  • All color options accept color names and hexcodes
  • visualStyle option allows per-component specification
  • Modular UI rendering (5 top-level components renderable separately)
  • Foldseek extension (PDBeMolstarPlugin.extensions.Foldseek)
  • StateGallery extension

[v3.2.0] - 2024-04-24

  • Mol* core dependency updated to 3.45.0
  • Removed Assembly Symmetry hack (now will hide assembly symmetry section for non-biological assemblies)
  • Manual testing via portfolio.html
  • Fixed hideStructure.nonStandard option
  • hideStructure.het option also hides ions
  • Removed loadCartoonsOnly option
  • Setting highlight and selection color (by .visual.setColor()) includes the outline color
  • Web-component attributes renamed to ligand-auth-asym-id and ligand-struct-asym-id (lowercase i)
  • .visual.select() function:
    • Improved performance
    • Allows color: null (do not apply color)
    • keepColors and keepRepresentations parameters to avoid clearing previous selections
  • Added .visual.tooltips and .visual.clearTooltips for setting custom tooltips
  • Built files don't contain package version in the filename

[v3.1.3] - 2023-12-06

  • Added Assembly Symmetry to structure controls, requires setting symmetryAnnotation in initialization parameters
  • Keep sequence panel in settings even when initially hidden
  • Changed tsconfig.json to place tsconfig.tsbuildinfo correctly (for incremental build)
  • Fixed coloring after annotation is switched off (revert to chain-id, not polymer-id)
  • Loading overlay with animated PDBe logo (requires initParam loadingOverlay)
  • Use linting to keep code nice
  • Correctly handle numeric value 0 in selections
  • Fetch structures from static files when possible, instead of using ModelServer

[v3.1.2] - 2023-08-01

  • Added PDBe Sifts Mappings module to solve UniPort mappings issue
  • Split Webpack config file into separate files for Production and Development

[v3.1.1] - 2023-05-18

  • Controls menu visible for AlphaFold view
  • Reactive parameter addition for better responsive layout support

[v3.1.0] - 2022-10-24

  • Mol* core dependency updated to V3.15.0
  • Superposition view - added option to superpose AlphaFold model
  • UniPort residue numbering param addition to higlight and selection helper methods
  • New param to display Sequence panel 62

[v1.2.1] - 2021-12-03

  • Selection helper method representationColor param issue fix

[v1.2.0] - 2021-09-20

  • Add parameters to support AlphaFold Protein Structure DB view
  • Add parameters to customize mouse events, issues #8
  • Add parameter to customize lighting setting
  • Extend Selection / highlight helper methods to support label_atom_id list, issues #32
  • Extend helper methods support for multiple structures
  • Extend hideCanvasControls
  • Fix Frame rate drop issue while rotating the canvas
  • Fix RGB color issue for params starting with r:0