concatfasta_1.0.yaml

!mobyle/program
name: concatfasta
version: '1.0'
title: concatfasta
description: Concatenation of sequences from two fasta files with exactly the same
    sequence identifiers
authors: Maufrais Corinne
inputs: !mobyle/inputparagraph
    children:
    - !mobyle/inputprogramparagraph
        prompt: Input section
        name: input
        children:
        - !mobyle/inputprogramparameter
            prompt: Fasta file
            format: ("", " -f " + str(value))[value is not None]
            simple: true
            argpos: 1
            mandatory: true
            name: firstFile
            command: false
            type: !mobyle/formattedtype
                format_terms: ['EDAM_format:2200']
                data_terms: ['EDAM_data:2044']
        - !mobyle/inputprogramparameter
            prompt: Fasta file
            format: ("", " -s " + str(value))[value is not None]
            simple: true
            argpos: 2
            mandatory: true
            name: scdFile
            command: false
            type: !mobyle/formattedtype
                format_terms: ['EDAM_format:2200']
                data_terms: ['EDAM_data:2044']
outputs: !mobyle/outputparagraph
    children:
    - !mobyle/outputprogramparagraph
        prompt: Input section
        name: input
        children:
        - !mobyle/outputprogramparameter
            prompt: Sequence(s) file
            filenames: '"concatfasta.out"'
            name: outfile
            output_type: stdout
            type: !mobyle/formattedtype
                format_terms: ['EDAM_format:2200']
                data_terms: ['EDAM_data:2044']
    - !mobyle/outputprogramparameter
        prompt: Standard error
        filenames: '"concatfasta.err"'
        name: stderr
        type: !mobyle/formattedtype
            data_terms: ['EDAM_data:2048']
operations: ['EDAM_operation:2121']
topics: ['EDAM_topic:0220']
command: concatfasta
env: {}