align_reorder.yaml

!mobyle/program
name: align_reorder
title: alignment entries reordering
description: Reorders the entries of an MSA
authors: "N\xE9ron, B."
inputs: !mobyle/inputparagraph
    children:
    - !mobyle/inputprogramparameter
        prompt: alignment
        format: '" -a " + str( value )'
        simple: true
        argpos: 2
        mandatory: true
        name: fasta_align
        command: false
        type: !mobyle/formattedtype
            format_terms: ['EDAM_format:2200']
            data_terms: ['EDAM_data:0863']
    - !mobyle/inputprogramparameter
        prompt: sequences
        format: '" -s " + str( value )'
        simple: true
        argpos: 1
        mandatory: true
        name: fasta_sequences
        command: false
        type: !mobyle/formattedtype
            format_terms: ['EDAM_format:2200']
            data_terms: ['EDAM_data:2044']
outputs: !mobyle/outputparagraph
    children:
    - !mobyle/outputprogramparameter
        prompt: reordered alignment
        filenames: '"align_reorder.out"'
        name: reordered_alignment
        output_type: stdout
        type: !mobyle/formattedtype
            format_terms: ['EDAM_format:2200']
            data_terms: ['EDAM_data:0863']
    - !mobyle/outputprogramparameter
        prompt: Standard error
        filenames: '"align_reorder.err"'
        name: stderr
        type: !mobyle/formattedtype
            data_terms: ['EDAM_data:2048']
comment: <html:div xmlns:html="http://www.w3.org/1999/xhtml">This tool reorders the
    entries of an MSA according to a reference set of sequences.</html:div>
operations: ['EDAM_operation:2122']
topics: ['EDAM_topic:0220']
command: align_reorder
env: {}