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ChangeLog
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===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 8 Dec 2023
Tag Name: cesm_pop_2_1_20231208
Tag Summary: Drop cheyenne support, add derecho support
Used the same PE layouts as the pop2_cesm2_2_rel_n01 tag; also
added grid decomp for gx3v7 with 128 cores (have it in 2.1.5
but not 2.2.2 for some reason)
Testing: ran aux_pop on derecho, and also some performance tests
derecho_intel tests all passed and performance is fine
gnu builds but doesn't run, nvhpc doesn't build; I can
try to fix that in the future if machine updates in
future alpha tags don't
modified: ChangeLog
modified: bld/generate_pop_decomp.xml
modified: cime_config/config_pes.xml
modified: cime_config/testdefs/testlist_pop.xml
modified: cime_config/testdefs/testlist_pop_nuopc.xml
===============================================================================
Tag Creator: mlevy
Developers: mlevy, kristenk
Tag Date: 11 May 2023
Tag Name: cesm_pop_2_1_20230511
Tag Summary: Update MARBL to most recent tag
Kristen added MARBL support for 4 phytoplankton and 2 zooplankton (4p2z),
and while we hadn't been updating POP for each MARBL tag this seemed like
a good one to bring in
Testing: aux_pop_MARBL.cheyenne (intel and gnu): answer-changing
-- All tests with MARBL enabled fail NLCOMP due to new parameters
in marbl_in
-- All tests with MARBL in fail BASELINE due to new output fields
* ecosys_add_cocco and ecosys_spectra_pfts both fail due to
legitimate answer changes; former due to picpoc computation,
latter due to changes in user_nl_marbl for the test
M Externals_POP.cfg
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/config_component.xml
M cime_config/testdefs/testlist_pop.xml
A cime_config/testdefs/testmods_dirs/pop/ecosys_add_4p2z/include_user_mods
A cime_config/testdefs/testmods_dirs/pop/ecosys_add_4p2z/shell_commands
M cime_config/testdefs/testmods_dirs/pop/ecosys_spectra_pfts/user_nl_marbl
M source/ecosys_driver.F90
M source/ecosys_tracers_and_saved_state_mod.F90
===============================================================================
Tag Creator: mlevy
Developers: mvertens
Tag Date: 9 Feb 2023
Tag Name: cesm_pop_2_1_20230209
Tag Summary: remove mct dependence from NUOPC driver
NUOPC was relying on MCT to read stream files in some specific situations, but
now that can be handled by CDEPS instead.
Testing: aux_pop_MARBL.cheyenne.intel b4b
M drivers/mct/strdata_interface_mod.F90
M drivers/nuopc/POP_MCT_vars_mod.F90
M drivers/nuopc/ocn_comp_nuopc.F90
M drivers/nuopc/ocn_comp_shr.F90
M drivers/nuopc/strdata_interface_mod.F90
M source/ecosys_forcing_mod.F90
M source/forcing_pt_interior.F90
M source/forcing_s_interior.F90
===============================================================================
Tag Creator: altuntas
Developers: jedwards
Tag Date: 22 Mar 2022
Tag Name: cesm_pop_2_1_20220322
Tag Summary: cleanup and reduce messages to stdout
Testing: aux_pop.cheyenne.intel b4b
M drivers/nuopc/ocn_comp_nuopc.F90
M drivers/nuopc/ocn_import_export.F90
M source/POP_SolversMod.F90
M source/damping.F90
M source/overflows.F90
M source/tidal_mixing.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy (h/t to klindsay for finding the bug)
Tag Date: 13 Jan 2022
Tag Name: cesm_pop_2_1_20220113
Tag Summary: initialize array holding So_dhdy to _FillValue before populating it
and passing it to the coupler (necessary when using land-block
elimination, otherwise field may be uninitialized in places)
Testing: SMS_Ld1_P136_D.T62_g17.C.cheyenne_intel.pop-144blocks_320x384_spacecurve
- ocnImp_So_dhdy in cpl.hi history file was corrupt, now has missing
values where expected due to LBE
M drivers/nuopc/ocn_import_export.F90
===============================================================================
Tag Creator: altuntas
Developers: mvertens
Tag Date: 06 Jan 2022
Tag Name: cesm_pop_2_1_20220106
Tag Summary: Replace constants module with pop_constants module
Testing: aux_pop on cheyenne. b4b
M 96 *.F files using the constants module (in drivers/ mpi/ serial/ source/ directories.)
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 09 Sep 2021
Tag Name: cesm_pop_2_1_20210909b
Tag Summary: Add support for GreenPlanet (UCI computer)
Testing: have run on greenplanet, also verified aux_pop does not change
answers on cheyenne
M bld/generate_pop_decomp.xml
M cime_config/config_pes.xml
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 09 Sep 2021
Tag Name: cesm_pop_2_1_20210909
Tag Summary: Update hobart tests -> izumi tests
Testing: aux_pop on izumi runs
M cime_config/config_pes.xml
M cime_config/testdefs/testlist_pop.xml
M cime_config/testdefs/testlist_pop_nuopc.xml
===============================================================================
Tag Creator: altuntas
Developers: fischer
Tag Date: 03 Aug 2021
Tag Name: cesm_pop_2_1_20210803
Tag Summary: Change shebang lines to python3
Testing: aux_pop.cheyenne_intel. b4b.
Changes to be committed:
M cime_config/buildcpp
M cime_config/buildlib
M cime_config/buildnml
===============================================================================
Tag Creator: altuntas
Developers: mvertens
Tag Date: 15 June 2021
Tag Name: cesm_pop_2_1_20210615
Tag Summary: Additional bug fixes for ndep and co2 for nuopc cap (PR #56)
Testing: mvertens tested with NUOPC
Changes to be committed:
M drivers/nuopc/ocn_comp_nuopc.F90
M drivers/nuopc/ocn_import_export.F90
===============================================================================
Tag Creator: altuntas
Developers: mvertens
Tag Date: 02 June 2021
Tag Name: cesm_pop_2_1_20210602
Tag Summary: fixed ndep problem for pop in nuopc cap
Testing: mvertens tested with NUOPC
Changes to be committed:
M drivers/nuopc/ocn_comp_nuopc.F90
M drivers/nuopc/ocn_import_export.F90
===============================================================================
Tag Creator: mlevy
Developers: jedwards
Tag Date: 19 April 2021
Tag Name: cesm_pop_2_1_20210419
Tag Summary: Remove duplicate code in NUOPC driver
Testing: Jim tested with NUOPC
Changes to be committed:
M drivers/nuopc/ocn_comp_nuopc.F90
===============================================================================
Tag Creator: altuntas
Developers: jedwards
Tag Date: 9 April 2021
Tag Name: cesm_pop_2_1_20210409
Tag Summary: add support for threading in cmeps, add SourceMods in bld
Testing: aux_pop (cheyenne_intel); bit-for-bit & ERI_Vnuopc.T62_g17.G.cheyenne_intel
Changes to be committed:
M bld/generate_pop_decomp.xml
M cime_config/buildlib
M drivers/nuopc/ocn_comp_nuopc.F90
===============================================================================
Tag Creator: mlevy
Developers: altuntas,mvertens
Tag Date: 30 March 2021
Tag Name: cesm_pop_2_1_20210330
Tag Summary: Additional tavg terms for momentum budget and updates to NUOPC cap
Testing: aux_pop_MARBL (cheyenne_intel); bit-for-bit
- no NUOPC tests were run, but this is answer-changing with NUOPC driver
- only ran aux_pop_MARBL because those baselines were readily available
Changes to be committed:
M Externals_POP.cfg
M cime_config/buildlib
M drivers/nuopc/ocn_comp_nuopc.F90
M drivers/nuopc/ocn_import_export.F90
D drivers/nuopc/ocn_shr_methods.F90
M source/baroclinic.F90
M source/strdata_interface_mod.F90
===============================================================================
Tag Creator: mlevy
Developers: jedwards
Tag Date: 4 December 2020
Tag Name: cesm_pop_2_1_20201204
Tag Summary: Updates to be compatible with PIO2
Testing: aux_pop (cheyenne_intel); bit-for-bit (sticking with PIO1 for testing)
Changes to be committed:
M source/hmix_aniso.F90
M source/io_netcdf.F90
M source/tavg.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy, klindsay
Tag Date: 30 July 2020
Tag Name: cesm_pop_2_1_20200730
Tag Summary: Add new compset for high-res G case that is forced by JRA and
includes BGC (G1850ECOIAF_JRA_HR)
1. Newer version of MARBL (just a bugfix)
2. New feature: set tavg_contents_override_file in user_nl_pop
to replace fully resolved tavg_contents file with one created
by hand
3. Add a few more valid spacecurve pe layouts for high-res
4. Different default PE layout for new compset than high-res without BGC
5. Add BGC initial condition and forcing file namelist defaults for tx0.1v3
6. Clean up ecosys namelists (don't include variables that aren't used)
7. New testmoddir that lets us test new compset with CICE namelist
changes that appear in production runs
8. New ecosys_vflux_tadvect_ctype namelist var sets tadvect_ctype
for tracers with virtual fluxes; now existing ecosys_tadvect_ctype
only applies to those without
9. Additional tavg variables to allow some variables to appear in
multiple tavg streams and / or be truncated to top 150m
* TEMP_2, TEMP_z_t_150m
* SALT_2, SALT_z_t_150m
* UVEL_2, UVEL_z_t_150m
* VVEL_2, VVEL_z_t_150m
* SHF_QSW_2
* All passive tracers have _2 and _z_t_150m variants as well
Testing: aux_pop (cheyenne_intel) and aux_pop_MARBL (cheyenne intel & gnu plus
hobart nag and pgi); non-BGC compsets are bit-for-bit with no namelist
changes. BGC compsets fail NLCOMP (expected; see 6 above) but are still
bit-for-bit.
M Externals_POP.cfg
M bld/build-namelist
M bld/generate_pop_decomp.xml
M bld/namelist_files/namelist_defaults_pop.xml
M bld/namelist_files/namelist_definition_pop.xml
M cime_config/config_compsets.xml
M cime_config/config_pes.xml
A cime_config/testdefs/testmods_dirs/pop/highres_JRA_cice/include_user_mods
A cime_config/testdefs/testmods_dirs/pop/highres_JRA_cice/shell_commands
A cime_config/testdefs/testmods_dirs/pop/highres_JRA_cice/user_nl_cice
M source/baroclinic.F90
M source/ecosys_driver.F90
M source/ecosys_forcing_mod.F90
M source/forcing.F90
M source/passive_tracers.F90
M source/tavg.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy, kristenk, klindsay
Tag Date: 9 July 2020
Tag Name: cesm_pop_2_1_20200709b
Tag Summary: Improve BGC tuning
1. Newer version of MARBL with bugfixes and new parameter defaults
2. Updated forcing and initial condition files for BGC compsets
3. Improve ecosys_add_cocco test to work with multiple cocco tunings
4. POP%CESM21 compset modifier to support old tunings
-- Includes new compsets (that are tested)
Testing: aux_pop (cheyenne_intel) and aux_pop_MARBL (cheyenne intel & gnu plus
hobart nag and pgi); non-BGC compsets are bit-for-bit with no namelist
changes but all BGC compsets fail BASELINE and NLCOMP (expected; the
important part is they pass RUN)
M Externals_POP.cfg
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/config_component.xml
M cime_config/config_compsets.xml
M cime_config/testdefs/testlist_pop.xml
M cime_config/testdefs/testmods_dirs/pop/ecosys_add_cocco/shell_commands
===============================================================================
Tag Creator: altuntas
Developers: qing
Tag Date: 9 July 2020
Tag Name: cesm_pop_2_1_20200709
Tag Summary: Bring in Langmuir turbulence induced entrainment changes
Enables the parameterization of Langmuir turbulence induced entrainment
by Li and Fox-Kemper (2017) via CVMix. ( POP2-CESM PR#31)
- Point the CVMix repository to v0.97b-beta and update the CVMix interface in POP.
- Get the surface layer averaged Langmuir number LaSL from WW3.
M Externals_POP.cfg
M bld/namelist_files/namelist_definition_pop.xml
M drivers/mct/POP_CplIndices.F90
M drivers/mct/ocn_import_export.F90
M drivers/nuopc/ocn_import_export.F90
M source/forcing_coupled.F90
M source/forcing_fields.F90
M source/vmix_kpp.F90
===============================================================================
Tag Creator: mlevy
Developers: klindsay (conflict resolution by mlevy)
Tag Date: 7 April 2020
Tag Name: cesm_pop_2_1_20200407
Tag Summary: Merge cesm2_1_x_rel branch into master
-- Brings in Keith's OMIP and JRA compset updates
-- Also updates ebm default parameters and adds impvmixu_tavg() function
Testing: aux_pop on cheyenne (intel compiler)
aux_pop_MARBL on cheyenne (gnu / intel compilers) and hobart (nag, pgi)
* climate-changing for gx1v7
* climate-changing when ecosys_on = .true.
* bit-for-bit for gx3v7 if ecosys_on = .false.
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M bld/namelist_files/namelist_definition_pop.xml
M cime_config/config_component.xml
M cime_config/config_compsets.xml
M cime_config/testdefs/testlist_pop.xml
M cime_config/testdefs/testlist_pop_nuopc.xml
D cime_config/testdefs/testmods_dirs/pop/ecosys_cesm2_0_settings
A cime_config/testdefs/testmods_dirs/pop/omip/include_user_mods
A cime_config/testdefs/testmods_dirs/pop/omip/shell_commands
A cime_config/testdefs/testmods_dirs/pop/omip/user_nl_pop
M source/baroclinic.F90
M source/ecosys_forcing_mod.F90
M source/forcing_timeseries_mod.F90
M source/vertical_mix.F90
===============================================================================
Tag Creator: altuntas
Developers: mvertens, mlevy, altuntas
Tag Date: 18 March 2020
Tag Name: cesm_pop_2_1_20200318
Tag Summary: Bring in NUOPC cap, fix cesm2_1_testlist, fix input_data_list
PRs #21, #20, #24, resspectively.
Testing: aux_pop on cheyenne, bfb
M bld/build-namelist
M cime_config/buildlib
A cime_config/testdefs/testlist_pop_nuopc.xml
D drivers/cpl_none/POP.F90
D drivers/cpl_none/POP_CouplingMod.F90
D drivers/cpl_none/POP_InitMod.F90
R100 drivers/cpl/POP_CplIndices.F90 drivers/mct/POP_CplIndices.F90
R100 drivers/cpl/POP_FinalMod.F90 drivers/mct/POP_FinalMod.F90
R100 drivers/cpl/POP_InitMod.F90 drivers/mct/POP_InitMod.F90
R100 drivers/cpl/POP_MCT_vars_mod.F90 drivers/mct/POP_MCT_vars_mod.F90
R100 drivers/cpl/ocn_communicator.F90 drivers/mct/ocn_communicator.F90
R100 drivers/cpl/ocn_comp_mct.F90 drivers/mct/ocn_comp_mct.F90
R100 drivers/cpl/ocn_import_export.F90 drivers/mct/ocn_import_export.F90
R083 drivers/cpl_none/POP_FinalMod.F90 drivers/nuopc/POP_FinalMod.F90
A drivers/nuopc/POP_MCT_vars_mod.F90
A drivers/nuopc/ocn_communicator.F90
A drivers/nuopc/ocn_comp_nuopc.F90
A drivers/nuopc/ocn_import_export.F90
A drivers/nuopc/ocn_shr_methods.F90
M source/POP_IOUnitsMod.F90
M source/initial.F90
M source/io_types.F90
===============================================================================
Tag Creator: altuntas
Developers: altuntas, mlevy
Tag Date: 07 January 2020
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20200107
Tag Summary: Fix BSF diagnostics for large NTHRDS and NTASKS (PR #18)
Fix tx0.1v3_transport_contents (PR #19)
Rebase cesm2_1_x_rel changes onto master (PR #7)
Testing: aux_pop on cheyenne, bfb
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/buildnml
M cime_config/config_component.xml
M input_templates/tx0.1v3_transport_contents
M source/diag_bsf.F90
===============================================================================
Tag Creator: mlevy
Developers: altuntas, mlevy
Tag Date: 30 July 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190730
Tag Summary: Update to newer version of MARBL, which requires some support
to run with coccolithophores. Also, Alper added some
github-specific files that have not yet been tagged
Testing: aux_pop on cheyenne, aux_pop_MARBL on cheyenne and hobart
All existing BASELINE tests pass (are bit-for-bit), but NLCOMP
fails for all compsets with ecosystem turned out (expected - we
reorganized marbl_in). Also added new ecosys_add_cocco test to
aux_pop_MARBL on both machines, that test runs successfully but
both BASELINE and NLCOMP fail since there isn't a baseline from
previous tag.
A .github/ISSUE_TEMPLATE.md
A .github/PULL_REQUEST_TEMPLATE.md
A .gitignore
M Externals_POP.cfg
A MARBL_scripts/add_cocco_to_init.py
A README.md
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/config_component.xml
M cime_config/testdefs/testlist_pop.xml
A cime_config/testdefs/testmods_dirs/pop/ecosys_add_cocco/include_user_mods
M cime_config/testdefs/testmods_dirs/pop/ecosys_spectra_pfts/user_nl_marbl
===============================================================================
Tag Creator: mlevy
Developers: klindsay, mlevy
Tag Date: 10 Apr 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190410
Tag Summary: Allow pop to run with nblocks_clinic = 0 on a task
Also improves support of general case where
nblocks_clinic < max_blocks_clinic
Testing: aux_pop on cheyenne - C tests were bit-for-bit with
20190325, G compsets didn't have a baseline to compare
against (previous testing didn't use CICE tag compatible
with CIME 5.8). Also, the following four new tests ran
successfully but failed BASELINE and NLCOMP due to being
new tests:
SMS_Ld2_P72_D.T62_g37.C1850ECO.cheyenne_intel.pop-ecosys_81blocks_100x116_spacecurve
SMS_Ld2_P80_D.T62_g37.C1850ECO.cheyenne_intel.pop-ecosys_81blocks_100x116_spacecurve
SMS_Ld1_P136_D.T62_g17.C.cheyenne_intel.pop-144blocks_320x384_spacecurve
SMS_Ld1_P144_D.T62_g17.C.cheyenne_intel.pop-144blocks_320x384_spacecurve
M cime_config/testdefs/testlist_pop.xml
A + cime_config/testdefs/testmods_dirs/pop/144blocks_320x384_spacecurve
A + cime_config/testdefs/testmods_dirs/pop/81blocks_100x116_spacecurve
A + cime_config/testdefs/testmods_dirs/pop/ecosys_144blocks_320x384_spacecurve
A + cime_config/testdefs/testmods_dirs/pop/ecosys_81blocks_100x116_spacecurve
M drivers/cpl/ocn_comp_mct.F90
M source/POP_SpaceCurveMod.F90
M source/distribution.F90
M source/ecosys_driver.F90
M source/ecosys_forcing_mod.F90
M source/geoheatflux.F90
M source/overflows.F90
M source/step_mod.F90
M source/tavg.F90
M source/tidal_mixing.F90
===============================================================================
Tag Creator: mlevy
Developers: jedwards
Tag Date: 25 Mar 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190325
Tag Summary: Make buildlib compatible with cime5.8
Testing: aux_pop on cheyenne (no baselines to compare against since change
in cime is not backwards compatible); all C compsets built and ran
but G compsets did not (cice is not yet cime5.8 compatible).
M cime_config/buildlib
===============================================================================
Tag Creator: mlevy
Developers: jedwards
Tag Date: 23 Mar 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190323
Tag Summary: Remove duplicate code in io_pio.F90
Testing: aux_pop on cheyenne_intel and a single hobart_nag test
M source/io_pio.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy, jluo
Tag Date: 22 Mar 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190322
Tag Summary: Update MARBL to include Jessica's SPECTRA model (and add an
aux_pop_MARBL test for it). Requires a temporary additional valid
value for OCN_BGC_CONFIG in order to get the default initial conditions
right, and also increases max tavg variable count
Testing: aux_pop on cheyenne_intel (ran aux_pop_MARBL on marbl_dev_n104 tag).
NLCOMP failures for all [CG]1850ECO compsets because new parameters
were introduced. Also, same tests are not bit-for-bit on cheyenne_intel
and hobart_nag because of compiler optimization of x**1.5 in MARBL. Other
compilers (and non-ecosystem compsets) are bit-for-bit.
M Externals_POP.cfg
M MARBL_scripts/MARBL_wrappers/MARBL_settings.py
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/config_component.xml
M cime_config/testdefs/testlist_pop.xml
A + cime_config/testdefs/testmods_dirs/pop/ecosys_spectra_pfts
M source/tavg.F90
===============================================================================
Tag Creator: klindsay
Developers: klindsay
Tag Date: 06 Mar 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190306
Tag Summary: correct ssp compset longname string matching
Testing: none
M cime_config/config_component.xml
===============================================================================
Tag Creator: klindsay
Developers: klindsay, altuntas
Tag Date: 22 Feb 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190222
Tag Summary: Add support for OCN_TRANSIENT=ssp126,ssp585
Testing: aux_pop on cheyenne/intel (with ssp585 changes)
all tests pass, all tests passed b4b
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/config_component.xml
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 18 Jan 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190118
Tag Summary: Set sfwf_weak_restore to 4 years for CORE2 and 1 year for JRA
Remove several unnecessary _HIRES ifdefs
(Additional CORE2 and JRA forcing changes in CIME PR #2984)
Testing: aux_pop and aux_pop_tripole on cheyenne/intel, answer changes in
all forced cases (due to changes in sfwf_weak_restore and
coldair_outbreak_mod)
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M source/step_mod.F90
M source/tavg.F90
===============================================================================
Tag Creator: jedwards
Developers: jedwards
Tag Date: 15 Jan 2019
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20190115
Tag Summary: Allow buildcpp to rewrite case env_build.xml
M cime_config/buildlib
M cime_config/buildnml
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 19 Dec 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20181219
Tag Summary: Add the 48yr/day PE layout decomposition
Testing: aux_pop on cheyenne/intel, b4b
Files Modified:
M bld/generate_pop_decomp.xml
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 22 Oct 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20181022
Tag Summary: Bring in MARBL code clean-up
Testing: aux_pop on cheyenne/intel, aux_pop_MARBL on cheyenne/{intel,gnu} and
hobart/{nag,pgi}. All tests pass except NLCOMP when ecosys tracer
module is turned on. (Note: BASELINE tests pass, even with ecosys)
Files Modified:
M Externals_POP.cfg
M MARBL_scripts/MARBL_wrappers/MARBL_settings.py
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 19 Oct 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20181019
Tag Summary: Enable MOC computation with land-block elimination
- ignore missing values during lbe aux grid check
- set gather_global_dbl missing value to undefined_nf_r8 instead of undefined_nf
- add gx1v7 spacecurve decompositions
- add gx1v7 spacecurve test
Testing: aux_pop on cheyenne/intel. bfb except the new test.
Files Modified:
M mpi/gather_scatter.F90
M source/diags_on_lat_aux_grid.F90
M bld/generate_pop_decomp.xml
M cime_config/testdefs/testlist_pop.xml
A cime_config/testdefs/testmods_dirs/pop/default_spacecurve
A cime_config/testdefs/testmods_dirs/pop/default_spacecurve/shell_commands
A cime_config/testdefs/testmods_dirs/pop/default_spacecurve/user_nl_pop
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 15 Oct 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20181015
Tag Summary: Update CVMix to latest version (bfb, better performance)
Also, change cvmix test (which uses lcvmix = .true.) to
no_cvmix test (which uses lcvmix = .false.) -- default value
of lcvmix is already true, so we need a test using the old KPP
module.
Testing: aux_pop on cheyenne/intel. bfb except the renamed test.
M Externals_POP.cfg
M cime_config/testdefs/testlist_pop.xml
D cime_config/testdefs/testmods_dirs/pop/cvmix
D cime_config/testdefs/testmods_dirs/pop/cvmix/include_user_mods
D cime_config/testdefs/testmods_dirs/pop/cvmix/user_nl_pop
A cime_config/testdefs/testmods_dirs/pop/no_cvmix
A cime_config/testdefs/testmods_dirs/pop/no_cvmix/include_user_mods
A cime_config/testdefs/testmods_dirs/pop/no_cvmix/user_nl_pop
===============================================================================
Tag Creator: altuntas
Developers: jedwards
Tag Date: 04 Oct 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20181004
Tag Summary: A fix for cime issue #2822 and run the cime interface scripts through py3 pylint
Also, added a multi-instance C1850ECO test in aux_pop
Testing: aux_pop on cheyenne/intel. bfb except the new test.
M bld/build-namelist
M cime_config/buildcpp
M cime_config/buildlib
M cime_config/buildnml
M cime_config/testdefs/testlist_pop.xml
===============================================================================
Tag Creator: klindsay
Developers: klindsay
Tag Date: 26 Sep 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180926
Tag Summary: update ndep for OCN_TRANSIENT=1850-2000
updated ndep forcing files are from CESM 2.1 BWHIST runs, and span 1849-2015
introduce new test into cheyenne/intel, aux_pop and aux_pop_MARBL:
ERS.T62_g17.C1850ECO.cheyenne_intel.pop-ecosys_ocn_transient_1850_2000
Testing: aux_pop on cheyenne/intel
tests pass, including baseline comparison to cesm_pop_2_1_20180921
(new test fails NLCOMP and BASELINE)
Files Modified:
M ChangeLog
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/testdefs/testlist_pop.xml
A cime_config/testdefs/testmods_dirs/pop/ecosys_ocn_transient_1850_2000
A cime_config/testdefs/testmods_dirs/pop/ecosys_ocn_transient_1850_2000/include_user_mods
A cime_config/testdefs/testmods_dirs/pop/ecosys_ocn_transient_1850_2000/shell_commands
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 21 Sep 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180921
Tag Summary: add coordinates to tavg_TEMP2 (for CMIP6 diags)
Testing: aux_pop on cheyenne/intel
Files Modified:
M source/baroclinic.F90
===============================================================================
Tag Creator: klindsay
Developers: klindsay
Tag Date: 12 Sep 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180912
Tag Summary: add support for abio_dic_dic14 in CMIP6 historical runs
merged from abio_cmip6_historical_n01_cesm_pop_2_1_20180830
Testing: aux_pop on cheyenne/intel
except for tests mentioned below, all tests pass
NLCOMP fails for tests with abio_dic_dic14, because of new namelist var
some MEMCOMP failures
if OCN_TRANSIENT='1850-2000' then set abio_atm_co2_opt='drv_diag', abio_atm_d14c_opt='file'
add ABIO-DIC modifier to POP2 in compset longnames, enable abio_dic_dic14 if it is present
extend pattern matching to allow POP2 compset modifiers to be in arbitrary order
(remove ECO-PHYS-CYCLE modifier, replace usage with %ECO%PHYS-CYCLE)
add abio_dic_dic14_restfile_fallback namelist var
if abio_dic_dic14 is reading from a restart file, and module tracers are not present,
then read them from the file specified by abio_dic_dic14_restfile_fallback
set abio_dic_dic14_restfile_fallback to most recent results from CMIP6 B1850 control run (for g17 only)
Files Modified:
M .
M ChangeLog
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M bld/namelist_files/namelist_definition_pop.xml
M cime_config/config_component.xml
M cime_config/config_compsets.xml
M input_templates/ocn.abio_dic_dic14.tavg.csh
M source/abio_dic_dic14_mod.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 30 August 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180830
Tag Summary: Merge latest marbl_dev branch tag (n98) onto trunk
-- bit-for-bit code-cleanup / refactor in MARBL requires some
changes to the pop driver as well
Testing: aux_pop on cheyenne_intel and aux_pop_MARBL on cheyenne_{intel,gnu}
as well as hobart_{nag,pgi}. Testing was done on marbl_dev_n98 which
is identical to this tag
M Externals_POP.cfg
M source/ecosys_driver.F90
M source/ecosys_forcing_mod.F90
M source/ecosys_running_mean_saved_state_mod.F90
M source/ecosys_tavg.F90
M source/ecosys_tracers_and_saved_state_mod.F90
M source/passive_tracers.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 29 August 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180829
Tag Summary: Update manage_externals to manic-v1.1.5
(Also updated the .git remote)
-- Requested by Bill Sacks due to bug in older versions
Testing: None (ensured that CVMix and MARBL were checked out properly)
CVMIX tag: v0.90-beta
MARBL tag: marbl0.31.0
M externals/manage_externals
[Lots of files modified in the above directory]
===============================================================================
Tag Creator: klindsay
Developers: klindsay
Tag Date: 4 August 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180804
Tag Summary: Merge latest final_CMIP6_BGC_tags branch tag (n13) onto trunk
correct IAGE reset when lrobert_filter=.true., add CMIP tracer budget diagnostics
move submeso and diag_gm_bolus-dependent tavg vars into separate tavg_contents files
update 1850 Ndep forcing from recent coupled B1850 WACCM run
correct EBM tavg vars, enable some 2D EBM tavg vars by default
Testing: aux_pop intel/cheyenne
MARBL tag marbl0.31.0 from marbl-ecosys/MARBL
tests pass, including BASELINE to cesm_pop_2_1_20180720
BASELINE fails for lrobert_filter=.true., because IAGE changed
NLCOMP and BASELINE failed for all ECO compsets, because of namelist/forcing changes
some MEMCOMP failures
M ChangeLog
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M bld/namelist_files/namelist_definition_pop.xml
A + input_templates/gm_bolus_terms_tavg_contents
A + input_templates/gm_bolus_terms_tavg_contents_high_freq
M input_templates/gx1v6_tavg_contents
M input_templates/gx1v6_tavg_contents_high_freq
M input_templates/gx1v7_tavg_contents
M input_templates/gx1v7_tavg_contents_high_freq
M input_templates/gx3v5_tavg_contents
M input_templates/gx3v7_tavg_contents
M input_templates/ocn.cfc.tavg.csh
M input_templates/ocn.iage.tavg.csh
M input_templates/ocn.sf6.tavg.csh
A + input_templates/submeso_terms_tavg_contents
A + input_templates/submeso_terms_tavg_contents_high_freq
M source/IRF_mod.F90
M source/estuary_vsf_mod.F90
M source/hmix_gm.F90
M source/hmix_gm_aniso.F90
A + source/hmix_gm_share.F90
M source/horizontal_mix.F90
M source/mix_submeso.F90
M source/passive_tracers.F90
M source/step_mod.F90
M source/tavg.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 20 July 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180720
Tag Summary: Merge latest marbl_dev branch tag (n95) onto trunk
1) POP changes
- New OCN_BGC_CONFIG variable in env_run.xml determines which
tunings to use
- Some namelist variables have different defaults depending on
OCN_BGC_CONFIG
- New test run in aux_pop and aux_pop_MARBL ensures no
unexpected changes to old tunings
2) MARBL changes
- Multiple default settings files to allow running with old
defaults (e.g. CESM 2.0 configuration); POP selects file
based on OCN_BGC_CONFIG value
Testing: aux_pop on cheyenne (intel) (identical code on marbl_dev and
marbl_dev_levy tested with aux_pop_MARBL on cheyenne and hobart)
-- all tests pass except new ecosys_cesm2_0_settings fail NLCOMP
and BASELINE due to lack of existing baselines
M Externals_POP.cfg
M MARBL_scripts/MARBL_wrappers/MARBL_diagnostics.py
M MARBL_scripts/MARBL_wrappers/MARBL_settings.py
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/buildcpp
M cime_config/buildnml
M cime_config/config_component.xml
M cime_config/testdefs/testlist_pop.xml
A + cime_config/testdefs/testmods_dirs/pop/ecosys_cesm2_0_settings
===============================================================================
Tag Creator: mlevy
Developers: klindsay
Tag Date: 19 July 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180716
Tag Summary: Tune ocean BGC for CMIP 6 -- this requires an updated MARBL tag
and some new POP namelist options to control new features in MARBL.
Also, three bugfixes:
1. Missing scale_factor for N_SALT diagnostic
2. Correct illegal argument aliasing in time_management.F90
3. Tracer states and some other diagnostics were computed incorrectly
when the Robert filter was enabled (i.e. in gx1v7 runs)
Testing: aux_pop on cheyenne/intel - all POP2%ECO tests fail BASELINE and
NLCOMP; all non-ECO gx1v7 tests fail BASELINE (but pass NLCOMP),
all non-ECO gx3v7 tests pass both BASELINE and NLCOMP.
M Externals_POP.cfg
M MARBL_scripts/MARBL_wrappers/MARBL_settings.py
M MARBL_scripts/MARBL_wrappers/POP_ecosys_diagnostics.py
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M bld/namelist_files/namelist_definition_pop.xml
M cime_config/config_component.xml
M input_templates/gx1v6_tavg_contents
M input_templates/gx1v7_tavg_contents
M input_templates/gx3v7_tavg_contents
M input_templates/ocn.abio_dic_dic14.tavg.csh
M input_templates/ocn.cfc.tavg.csh
M input_templates/ocn.iage.tavg.csh
M input_templates/ocn.sf6.tavg.csh
M source/baroclinic.F90
M source/diagnostics.F90
M source/ecosys_forcing_mod.F90
M source/passive_tracers.F90
M source/step_mod.F90
M source/tavg.F90
M source/time_management.F90
===============================================================================
Tag Creator: altuntas
Developers: jedwards, altuntas
Tag Date: 5 July 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180705
Tag Summary: Add optional NDEP modifier for POP compsets. The modifier
determines whether OCN_NDEP_DRIVER is to be set to True. Also
added latent_heat_fusion_mks field for CMIP6 vars.
Testing: aux_pop on cheyenne/intel. b4b.
M bld/build-namelist
M cime_config/config_component.xml
M source/tavg.F90
===============================================================================
Tag Creator: mlevy
Developers: mlevy
Tag Date: 14 June 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180614
Tag Summary: Update MARBL to latest version and make python scripts compatible
with python3
Testing: built a single case on my laptop (no Fortran changes, so should
be bit-for-bit with previous tag)
M Externals_POP.cfg
M MARBL_scripts/MARBL_wrappers/__init__.py
===============================================================================
Tag Creator: altuntas
Developers: altuntas
Tag Date: 31 May 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180531
Tag Summary: Remove/fix bad compsets. Get MARBL external from github repo, not from svn.
Testing: aux_pop on cheyenne (intel)
M Externals_POP.cfg
M cime_config/config_compsets.xml
===============================================================================
Tag Creator: mlevy
Developers: mlevy, klindsay
Tag Date: 14 May 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180514
Tag Summary: Merge latest marbl_dev branch tag (n92) onto trunk
1) POP changes
- Running mean saved state comes from same restart file as
ecosys base tracers, not ciso
- build-namelist checks value of CPL_I2O_PER_CAT and only
calls xmlchange if needed
- Better pe layouts on hobart, remove references to yellowstone
in config_pes.xml
- Add gx1v7 test to hobart_nag aux_pop_MARBL, and add a gx3v7
with the ecosystem on to prealpha (also hobart_nag)
- performance_eval test works with ecosystem on
- New river nutrient input file for gx3v7 to be consistent with
mapping files created April 30
2) MARBL changes
- New calcToFloor diagnostic
Testing: aux_pop on cheyenne (intel), aux_pop_MARBL on hobart (nag, intel,
and pgi)
- all gx3v7 tests with ecosystem on fail NLCOMP and BASELINE due
to new river nutrient input file
- all gx3v7 tests on hobart fail NLCOMP and BASELINE due to new
pe layout (so reverting river nutrient input will not be b4b
on that machine)
- gx1v7 hobart_intel test does not successfully run. PGI does
run and nag has ~50% success rate (resubmitting failed nag
test usually results in success)
- all other tests pass
M Externals_POP.cfg
M bld/build-namelist
M bld/namelist_files/namelist_defaults_pop.xml
M cime_config/config_pes.xml
M cime_config/testdefs/testlist_pop.xml
M cime_config/testdefs/testmods_dirs/pop/performance_eval/user_nl_marbl
M source/ecosys_driver.F90
A + source/ecosys_running_mean_saved_state_mod.F90
M source/ecosys_tracers_and_saved_state_mod.F90
===============================================================================
Tag Creator: altuntas
Developers: youngsun, dennis
Tag Date: 12 May 2018
Tag Name: pop2/trunk_tags/cesm_pop_2_1_20180512
Tag Summary: Update to POP's halo update that improves model performance.
M mpi/POP_HaloMod.F90