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ChangeLog
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================================================================================
This file describes what tags were created and why
================================================================================
Originator: bertinia
Date: 27 November 2016
Model: CESM_postprocessing
Version: CESM_postprocessing_v0.1.5
One-line: Fix chunking for timeseries
modified: Config/config_timeseries.xml
modified: Config/config_timeseries.xsd
modified: cesm_utils/cesm_utils/create_postprocess
modified: timeseries/timeseries/cesm_tseries_generator.py
modified: ocn_diag/ncl_lib/sfcflx_za.ncl
=================================================================================
Originator: mickelso
Date: 14 October 2016
Model: CESM_postprocessing
Version: CESM_postprocessing_v0.1.4
One-line: add chunking for timeseries
modified: Config/config_timeseries.xml
modified: Config/config_timeseries.xsd
modified: cesm_utils/cesm_utils/create_postprocess
modified: timeseries/setup.py
modified: timeseries/timeseries/cesm_tseries_generator.py
add: timeseries/timeseries/chunking.py
================================================================================
Originator: aliceb
Date: 12 October 2016
Model: CESM_postprocessing
Version: CESM_postprocessing_v0.1.3
One-line: add additional WACCM datasets. Closes github issue #37.
modified: copy_html
modified: ../atm_diag/functions_waccm.ncl
modified: ../atm_diag/html/model-obs/wset2/wset2_2.htm
modified: ../atm_diag/html/model-obs/wset3/wset3_2.htm
modified: ../atm_diag/html/model-obs/wset4/wset4_2.htm
modified: ../atm_diag/html/model-obs/wset5/wset5_2.htm
modified: ../atm_diag/html/model1-model2/wset3/wset3_2.htm
modified: ../atm_diag/html/model1-model2/wset4/wset4_2.htm
modified: ../atm_diag/html/model1-model2/wset5/wset5_2.htm
modified: ../atm_diag/plot_waccm_cycle.ncl
modified: ../atm_diag/plot_waccm_map.ncl
modified: ../atm_diag/plot_waccm_vcycle.ncl
modified: ../atm_diag/plot_waccm_vzonal.ncl
modified: ../atm_diag/tables_waccm.ncl
modified: ../diagnostics/diagnostics/atm/atm_avg_generator.py
add: ../averager/pp_tests/control_ocn_series.py
add: ../averager/pp_tests/runAvg_ocn_mpi.sh
================================================================================
Originator: aliceb
Date: 11 October 2016
Model: CESM_postprocessing
Version: CESM_postprocessing_v0.1.2
One-line: bug-fixes and code clean-up
modified: Config/config_timeseries.xml
modified: Tools/copy_html
modified: atm_diag/plot_surfaces_cons.ncl
modified: averager/Makefile
modified: cesm_utils/cesm_utils/create_postprocess
modified: diagnostics/diagnostics/atm/Config/config_diags_atm.xml
modified: diagnostics/diagnostics/atm/atm_avg_generator.py
modified: diagnostics/diagnostics/lnd/lnd_avg_generator.py
modified: diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
modified: diagnostics/diagnostics/ocn/Plots/cpllog_timeseries.py
modified: diagnostics/diagnostics/ocn/Plots/moc_annual_timeseries.py
modified: diagnostics/diagnostics/ocn/Plots/moc_monthly_timeseries.py
modified: diagnostics/diagnostics/ocn/Plots/poplog_timeseries.py
modified: diagnostics/diagnostics/ocn/Plots/regional_mean_timeseries.py
modified: diagnostics/diagnostics/ocn/ocn_avg_generator.py
modified: mpi_utils/Makefile
modified: reshaper/Makefile
modified: timeseries/timeseries/cesm_tseries_generator.py
================================================================================
Originator: aliceb
Date: 22 September 2016
Model: postprocessing
Version: postprocessing_20160922
One-line: moved large netcdf files in the various component subdirs and SVN
parallel branches to the default machine_postprocess.xml <obs_root> element for
each component. This is because of the github restriction on large files sizes.
Added more examples for CESM2.0 PI Control run.
A docs/README
D docs/create_postprocess.notes
M Tools/copy_html
M SVN_EXTERNAL_DIRECTORIES
M diagnostics/diagnostics/ocn/model_vs_control.py
M diagnostics/diagnostics/ocn/model_vs_obs.py
M diagnostics/diagnostics/ocn/ocn_avg_generator.py
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/lnd_avg_generator.py
A examples/CESM2.0-PI-Control/env_diags_atm.xml
A examples/CESM2.0-PI-Control/env_timeseries.xml
A examples/CESM2.0-PI-Control/env_diags_lnd.xml
A examples/CESM2.0-PI-Control/env_postprocess.xml
A examples/CESM2.0-PI-Control/env_diags_ocn.xml
A examples/CESM2.0-PI-Control/README
A examples/CESM2.0-PI-Control/env_diags_ice.xml
================================================================================
Originator: aliceb
Date: 20 September 2016
Model: postprocessing
Version: postprocessing_20160920
One-line: minor bug fix
M diagnostics/diagnostics/ocn/ocn_diags_generator.py
================================================================================
Originator: aliceb
Date: 09 September 2016
Model: postprocessing
Version: postprocessing_20160909
One-line: update atm_diag external to latest branch tag
M SVN_EXTERNAL_DIRECTORIES
================================================================================
Originator: aliceb
Date: 08 September 2016
Model: postprocessing
Version: postprocessing_20160908
One-line: Fix to copy_html. Added branch tags to SVN to all comp_diags in
preparation for moving to github. The manageSymLinks.py is not yet fully
functional.
A diag_utils/diag_utils/manageSymLinks.py
M ChangeLog
M Tools/copy_html
M SVN_EXTERNAL_DIRECTORIES
================================================================================
Originator: aliceb
Date: 1 September 2016
Model: postprocessing
Version: not yet tagged
One-line: Tested with new pyAverager v0.9.10 and WACCM zonalavg plots.
Updated the web_dirs output file names with a date suffix instead of
mpi comm rank and size which isn't always unique.
A averager/pp_tests
A averager/pp_tests/runAvg_mpi.sh
A averager/pp_tests/control_atm_slice_zonAvg.py
M diagnostics/diagnostics/ocn/model_vs_control.py
M diagnostics/diagnostics/ocn/model_timeseries.py
M diagnostics/diagnostics/ocn/model_vs_obs.py
M diagnostics/diagnostics/ocn/ocn_diags_generator.py
M diagnostics/diagnostics/ocn/model_vs_obs_ecosys.py
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/model_vs_obs.py
M diagnostics/diagnostics/atm/model_vs_model.py
M diagnostics/diagnostics/atm/model_vs_obs.py
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M timeseries/timeseries/cesm_tseries_generator.py
================================================================================
Originator: aliceb
Date: 24 August 2016
Model: postprocessing
Version: not yet tagged
One-line: Update to config_timeseries in preparation of adding "chunking" to
timeseries. Update pyAverager version to v0.9.10. Update atm_avg_generate.py
to initialize a main_comm and look for the netcdf format in the XML.
THIS CHECKIN NEEDS TO BE TESTED!!
M Config/config_timeseries.xml
M Config/config_timeseries.xsd
M SVN_EXTERNAL_DIRECTORIES
M diagnostics/diagnostics/atm/Config/config_diags_atm.xml
M diagnostics/diagnostics/atm/atm_avg_generator.py
M diagnostics/diagnostics/lnd/lnd_avg_generator.py
================================================================================
Originator: aliceb
Date: 18 August 2016
Model: postprocessing
Version: postprocessing_20160818
One-line: Move stand-alone tools to cesm_utils so they are installed into virtualenv.
Update to no longer require CIME for any scripts. Update to atm_avg_generator.py to
add the zonalavg to the average list if test_compute_zonalAvg or cntl_compute_zonalAvg
is set to True. atm Zonal averages used for WACCM plot sets. There is a bug in the
pyAverager that won't allow zonal averages to be computed along with all the other
averages so pyAverager v0.9.9 is not quite ready.
M diag_utils/diag_utils/diagUtilsLib.py
D create_f2py_remap
D create_ocn_za
D get_machine
M Config/config_postprocess.xml
M diagnostics/diagnostics/atm/model_vs_model.py
M diagnostics/diagnostics/atm/model_vs_obs.py
M diagnostics/diagnostics/atm/Config/config_diags_atm.xml
M diagnostics/diagnostics/atm/atm_avg_generator.py
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M cesm_utils/VERSION
A + cesm_utils/cesm_utils/module_check
A + cesm_utils/cesm_utils/get_machine
A + cesm_utils/cesm_utils/create_f2py_remap
A + cesm_utils/cesm_utils/create_postprocess
D cesm_utils/cesm_utils/module_check.py
A + cesm_utils/cesm_utils/create_ocn_za
M cesm_utils/setup.py
D create_postprocess
M create_python_env
================================================================================
Originator: aliceb
Date: 9 August 2016
Model: postprocessing
Version: postprocessing_20160809
One-line: update SVN external for pyAverager to point to new version that
supports WACCM zonal averages.
M SVN_EXTERNAL_DIRECTORIES
================================================================================
Originator: aliceb
Date: 5 August 2016
Model: postprocessing
Version: not tagged yet
One-line: removed clean_archive.pl because need to replace with python script
D clean_archive.pl
================================================================================
Originator: aliceb
Date: 4 August 2016
Model: postprocessing
Version: postprocessing_20160804
One-line: add support for ice diags to run in parallel; model_vs_obs and model_vs_model
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/Plots/ice_diags_plot_factory.py
A diagnostics/diagnostics/ice/Plots/web_hem_avgDiff.py
M diagnostics/diagnostics/ice/Plots/__init__.py
A diagnostics/diagnostics/ice/Plots/web_reg_avgDiff.py
M diagnostics/diagnostics/ice/Plots/web_hem_avg.py
A diagnostics/diagnostics/ice/Plots/web_hem_climDiff.py
A diagnostics/diagnostics/ice/Plots/web_reg_climDiff.py
M diagnostics/diagnostics/ice/Plots/web_reg_avg.py
M diagnostics/diagnostics/ice/Plots/web_hem_clim.py
M diagnostics/diagnostics/ice/Plots/web_reg_clim.py
M diagnostics/diagnostics/ice/Config/config_diags_ice.xml
================================================================================
Originator: aliceb
Date: 1 August 2016
Model: postprocessing
Version: trunk - not yet tagged
One-line: removed cimeroot dependency to create_python_env.
A create_ocn_za
M Machines/machine_postprocess.xsd
M Machines/machine_postprocess.xml
M Machines/yellowstone_modules
M Templates/za_makefile.tmpl
M Tools/create_env_script
M Tools/copy_html
M create_postprocess
M create_python_env
================================================================================
Originator: bardeenc
Date: 31 July 2016
Model: postprocessing
Version: trunk
Added support for 5 new sets of plots for the WAWG including:
wset1 - table
wset2 - seasonal line plots
wset3 - vertical seasonal contour plots
wset4 - vertical zonal average contour plots
wset5 - horizontal contour plots
The tables for wset1 replace its previous definition as vertical zonal
average contour plots. That capability has been moved to wset4. All sets
plots are implemented for model to model and model to observations
(currently ERAI, MERRA, and MLS) with corresponding html.
M ChangeLog
M diagnostics/diagnostics/atm/model_vs_model.py
M diagnostics/diagnostics/atm/Plots/__init__.py
A diagnostics/diagnostics/atm/Plots/wset2.py
A diagnostics/diagnostics/atm/Plots/wset4.py
M diagnostics/diagnostics/atm/Plots/atm_diags_plot_factory.py
M diagnostics/diagnostics/atm/Plots/wset1.py
A diagnostics/diagnostics/atm/Plots/wset3.py
A diagnostics/diagnostics/atm/Plots/wset5.py
M diagnostics/diagnostics/atm/model_vs_obs.py
M diagnostics/diagnostics/atm/html/model-obs/sets_2.htm
M diagnostics/diagnostics/atm/html/model-obs/wset1/wset1_1.htm
M diagnostics/diagnostics/atm/html/model-obs/wset1/wset1_2.htm
D diagnostics/diagnostics/atm/html/model-obs/wset1/wset1_3.htm
A diagnostics/diagnostics/atm/html/model-obs/wset2
A diagnostics/diagnostics/atm/html/model-obs/wset2/wset2_1.htm
A diagnostics/diagnostics/atm/html/model-obs/wset2/wset2_2.htm
A diagnostics/diagnostics/atm/html/model-obs/wset3
A diagnostics/diagnostics/atm/html/model-obs/wset3/wset3_1.htm
A diagnostics/diagnostics/atm/html/model-obs/wset3/wset3_2.htm
A diagnostics/diagnostics/atm/html/model-obs/wset4
A diagnostics/diagnostics/atm/html/model-obs/wset4/wset4_1.htm
A diagnostics/diagnostics/atm/html/model-obs/wset4/wset4_2.htm
A diagnostics/diagnostics/atm/html/model-obs/wset5
A diagnostics/diagnostics/atm/html/model-obs/wset5/wset5_2.htm
A diagnostics/diagnostics/atm/html/model-obs/wset5/wset5_1.htm
M diagnostics/diagnostics/atm/html/model1-model2/sets_2.htm
M diagnostics/diagnostics/atm/html/model1-model2/wset1/wset1_1.htm
M diagnostics/diagnostics/atm/html/model1-model2/wset1/wset1_2.htm
A diagnostics/diagnostics/atm/html/model1-model2/wset2
A diagnostics/diagnostics/atm/html/model1-model2/wset2/wset2_1.htm
A diagnostics/diagnostics/atm/html/model1-model2/wset2/wset2_2.htm
A diagnostics/diagnostics/atm/html/model1-model2/wset3
A diagnostics/diagnostics/atm/html/model1-model2/wset3/wset3_1.htm
A diagnostics/diagnostics/atm/html/model1-model2/wset3/wset3_2.htm
A diagnostics/diagnostics/atm/html/model1-model2/wset4
A diagnostics/diagnostics/atm/html/model1-model2/wset4/wset4_1.htm
A diagnostics/diagnostics/atm/html/model1-model2/wset4/wset4_2.htm
A diagnostics/diagnostics/atm/html/model1-model2/wset5
A diagnostics/diagnostics/atm/html/model1-model2/wset5/wset5_2.htm
A diagnostics/diagnostics/atm/html/model1-model2/wset5/wset5_1.htm
M diagnostics/diagnostics/atm/html/mvgifs2www
M diagnostics/diagnostics/atm/html/setup_obs
D diagnostics/diagnostics/atm/html/images/WSET1.png
A diagnostics/diagnostics/atm/html/images/WSET2.png
A diagnostics/diagnostics/atm/html/images/WSET3.png
A diagnostics/diagnostics/atm/html/images/WSET4.png
A diagnostics/diagnostics/atm/html/images/WSET5.png
A diagnostics/diagnostics/atm/html/images/WSET1.gif
M diagnostics/diagnostics/atm/html/setup_2models
M diagnostics/diagnostics/atm/Config/config_diags_atm.xml
================================================================================
Originator: aliceb
Date: 28 July 2016
Model: postprocessing
Version: postprocessing_20160728
One-line: Fix to race condition when setting the XML WEBDIR variables for copy_html. Update
copy_html to use $PP_CASE_PATH/web_dirs files instead of XML.
M diag_utils/diag_utils/diagUtilsLib.py
M Machines/machine_postprocess.xml
M Tools/copy_html
A Config/README.web_dirs
M diagnostics/diagnostics/ocn/ocn_diags_generator.py
M diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/model_vs_obs.py
M diagnostics/diagnostics/ice/ice_diags_generator.py
M diagnostics/diagnostics/ice/Config/config_diags_ice.xml
M diagnostics/diagnostics/atm/model_vs_model.py
M diagnostics/diagnostics/atm/model_vs_obs.py
M diagnostics/diagnostics/atm/Config/config_diags_atm.xml
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M create_postprocess
M examples/CESM1.1LE/files_to_get_model.txt
M examples/CESM1.1LE/files_to_get_control.txt
M examples/CESM1.1LE/get_LE_ocn_files.py
================================================================================
Originator: aliceb
Date: 25 July 2016
Model: postprocessing
Version: not tagged yet
One-line: minor fix for reset_modules XML
M create_postprocess
================================================================================
Originator: aliceb
Date: 22 July 2016
Model: postprocessing
Version: not tagged yet
One-line: updates that are still in test
M Machines/machine_postprocess.xsd
M Machines/machine_postprocess.xml
M Templates/postprocess.tmpl
A Templates/diagnostics.tmpl
M create_postprocess
M examples/CESM1.1LE/env_diags_atm.xml
M examples/CESM1.1LE/files_to_get_model.txt
M examples/CESM1.1LE/files_to_get_control.txt
M examples/CESM1.1LE/get_LE_ocn_files.py
M examples/CESM1.1LE/env_diags_lnd.xml
M examples/CESM1.1LE/env_diags_ice.xml
================================================================================
Originator: aliceb
Date: 19 July 2016
Model: postprocessing
Version: postprocessing_20160719
One-line: updates to copy_html to include a landing index page.
Also moved logos and diag_style.css out of ocn diag into Templates.
A Templates/logos
A Templates/logos/nsf1sm.gif
A Templates/logos/ncar-logo-sm.jpg
A Templates/diag_style.css
M Tools/copy_html
M diagnostics/diagnostics/ocn/ocn_diags_generator.py
D diagnostics/diagnostics/ocn/Templates/logos
D diagnostics/diagnostics/ocn/Templates/logos/nsf1sm.gif
D diagnostics/diagnostics/ocn/Templates/logos/ncar-logo-sm.jpg
D diagnostics/diagnostics/ocn/Templates/diag_style.css
================================================================================
Originator: aliceb
Date: 18 July 2016
Model: postprocessing
Version: not yet tagged
One-line: working version of copy_html but without a landing index page.
Update to ice WEBDIR paths.
M Tools/copy_html
M Config/config_postprocess.xml
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/model_vs_obs.py
================================================================================
Originator: aliceb
Date: 15 July 2016
Model: postprocessing
Version: postprocessing_20160715a
One-line: minor update in create_postprocess for ICE_NX and ICE_NY for stand-alone cases
M create_postprocess
================================================================================
Originator: aliceb
Date: 15 July 2016
Model: postprocessing
Version: postprocessing_20160715
One-line: Bug fix to pyAverager for land trend years. Updates to land and atm
to include years in final diag paths. Added ICE_NX and ICE_NY to create_postprocess
so they are inherited from and existing caseroot.
M Tools/copy_html
M SVN_EXTERNAL_DIRECTORIES
M Config/config_postprocess.xml
M diagnostics/diagnostics/atm/model_vs_model.py
M diagnostics/diagnostics/atm/model_vs_obs.py
M diagnostics/diagnostics/atm/Config/config_diags_atm.xml
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M create_postprocess
================================================================================
Originator: aliceb
Date: 14 July 2016
Model: postprocessing
Version: postprocessing_20160714
One-line: bug fixes, add lnd diags WEBDIR settings with years, add XML examples
from LE 002 run. Separate WACCM and Chem sets into their own group in
config_diags_atm.xml.
M Templates/batch_yellowstone.tmpl
M Tools/copy_html
M diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
M diagnostics/diagnostics/ocn/ocn_avg_generator.py
M diagnostics/diagnostics/atm/Config/config_diags_atm.xml
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
A examples/CESM1.1LE/env_diags_atm.xml
M examples/CESM1.1LE/files_to_get_model.txt
M examples/CESM1.1LE/files_to_get_control.txt
A examples/CESM1.1LE/env_diags_lnd.xml
A examples/CESM1.1LE/env_postprocess.xml
M examples/CESM1.1LE/README
A examples/CESM1.1LE/env_diags_ocn.xml
A examples/CESM1.1LE/env_diags_ice.xml
================================================================================
Originator: aliceb
Date: 08 July 2016
Model: postprocessing
Version: not tagged yet
One-line: Lots of bugfixes and enhancements for LENS post-processing, added
examples, updates to lnd diags, and polar T&S projection plots model vs. model.
M diag_utils/diag_utils/diagUtilsLib.py
A Tools/env_file.xsd
A Tools/gather_var_files.py
D Config/env_file.xsd
M diagnostics/diagnostics/ocn/Plots/polar_temp_salt.py
M diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
M diagnostics/diagnostics/ocn/ocn_avg_generator.py
M diagnostics/diagnostics/ice/Config/config_diags_ice.xml
M diagnostics/diagnostics/ice/ice_avg_generator.py
M diagnostics/diagnostics/atm/create_atm_html.py
M diagnostics/diagnostics/atm/model_vs_model.py
M diagnostics/diagnostics/atm/model_vs_obs.py
M diagnostics/diagnostics/atm/Config/config_diags_atm.xml
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/lnd_avg_generator.py
M create_postprocess
A examples
A examples/CESM1.1LE
A examples/CESM1.1LE/files_to_get_model.txt
A examples/CESM1.1LE/files_to_get_control.txt
A examples/CESM1.1LE/var_list.txt
A examples/CESM1.1LE/get_LE_ocn_files.py
A examples/CESM1.1LE/README
A examples/CESM2.0-PI-Control
================================================================================
Originator: aliceb
Date: 20 June 2016
Model: postprocessing
Version: postprocessing_20160620
One-line: add ICEDIAG_CLEANUP_FILES option. Fix github issues #20
and #3.
M Tools/pp_config
M cesm_utils/cesm_utils/processXmlLib.py
M diagnostics/diagnostics/ocn/model_vs_control.py
M diagnostics/diagnostics/ocn/model_timeseries.py
M diagnostics/diagnostics/ocn/ocn_diags_bc.py
M diagnostics/diagnostics/ocn/ocn_diags_generator.py
M diagnostics/diagnostics/ocn/ocn_diags_factory.py
M diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
M diagnostics/diagnostics/ocn/ocn_avg_generator.py
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/ice_diags_bc.py
M diagnostics/diagnostics/ice/model_vs_obs.py
================================================================================
Originator: aliceb
Date: 15 June 2016
Model: postprocessing
Version: postprocessing_20160615
One-line: add env_file.xsd for validation of env_*.xml files in caseroot. Fix
to --cesmtag argument option to create_postprocess.
A Config/env_file.xsd
M create_postprocess
================================================================================
Originator: aliceb
Date: 9 June 2016
Model: postprocessing
Version: postprocessing_20160609
One-line: successful testing of the processXmlLib class calls in the diag wrappers
complete.
M Machines/machine_postprocess.xml
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/model_vs_obs.py
M diagnostics/diagnostics/ice/ice_diags_generator.py
M diagnostics/diagnostics/ice/Config/config_diags_ice.xml
M diagnostics/diagnostics/ice/ice_avg_generator.py
M diagnostics/diagnostics/atm/model_vs_model.py
M diagnostics/diagnostics/atm/model_vs_obs.py
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/lnd_diags_generator.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
================================================================================
Originator: aliceb
Date: 6 June 2016
Model: postprocessing
Version: not tagged
One-line: reworked the processXmlLib classes so that they can be called
from the generator scripts to update the env_*.xml files. Minor mods
to the config_diags_*.xml for default settings.
M Machines/machine_postprocess.xml
M Tools/create_env_script
M Tools/pp_config
D Tools/pp_var_get
D Tools/PostProcessingXML.py
M Tools/copy_html
M Config/config_postprocess.xml
M diagnostics/diagnostics/ocn/model_vs_control.py
M diagnostics/diagnostics/ocn/model_timeseries.py
M diagnostics/diagnostics/ocn/model_vs_obs.py
M diagnostics/diagnostics/ocn/ocn_diags_generator.py
M diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
M diagnostics/diagnostics/ocn/model_vs_obs_ecosys.py
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/model_vs_obs.py
M diagnostics/diagnostics/ice/Config/config_diags_ice.xml
M diagnostics/diagnostics/ice/ice_avg_generator.py
M diagnostics/diagnostics/atm/model_vs_model.py
M diagnostics/diagnostics/atm/model_vs_obs.py
M diagnostics/diagnostics/atm/Config/config_diags_atm.xml
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M cesm_utils/VERSION
M cesm_utils/cesm_utils/__init__.py
A cesm_utils/cesm_utils/processXmlLib.py
M cesm_utils/cesm_utils/cesmEnvLib.py
M cesm_utils/setup.py
M create_postprocess
================================================================================
Originator: aliceb
Date: 23 May 2016
Model: postprocessing
Version: not tagged
One-line: mods to create_postprocess to handle inherited XML variables from an
existing caseroot better. Added pp_config tool to set and get XML variables.
Also updated wrapper scripts to handle standalone
xml parsing better in anticipation of ESMCI/CIME (python). Not fully
tested yet so not tagging this commit.
M Templates/env_postprocess.tmpl
A Tools/pp_config
M Tools/copy_html
M Config/config_postprocess.xml
M diagnostics/diagnostics/ocn/ocn_diags_generator.py
M diagnostics/diagnostics/ocn/ocn_avg_generator.py
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/model_vs_obs.py
M diagnostics/diagnostics/ice/ice_diags_generator.py
M diagnostics/diagnostics/ice/ice_avg_generator.py
M diagnostics/diagnostics/atm/atm_diags_generator.py
M diagnostics/diagnostics/atm/atm_avg_generator.py
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/lnd_diags_generator.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/lnd_regrid_generator.py
M diagnostics/diagnostics/lnd/lnd_avg_generator.py
M create_postprocess
================================================================================
Originator: aliceb
Date: 23 May 2016
Model: postprocessing
Version: postprocessing_20160517
One-line: Finish testing and debugging lnd_regrid_generator.py.
M diag_utils/diag_utils/diagUtilsLib.py
M diag_utils/setup.py
M Templates/batch_yellowstone.tmpl
M diagnostics/diagnostics/lnd/lnd_diags_generator.py
M diagnostics/diagnostics/lnd/lnd_regrid_generator.py
M cesm_utils/VERSION
M cesm_utils/setup.py
M create_python_env
M Makefile
================================================================================
Originator: aliceb
Date: 17 May 2016
Model: postprocessing
Version: postprocessing_20160517
One-line: Separate out lnd regridding to new script called lnd_regrid_generator.
Various bug fixes. Start adding support for XML classes. Update to newer version
of ASAPPyTools.
M SVN_EXTERNAL_DIRECTORIES
M diag_utils/diag_utils/diagUtilsLib.py
M Machines/machine_postprocess.xsd
M Machines/machine_postprocess.xml
M Templates/batch_yellowstone.tmpl
A Tools/ration_script
A Tools/PostProcessingXML.py
A Tools/ration_example.py
M Tools/pp_var_get
M Config/config_timeseries.xsd
M Config/config_timeseries.xml
M create_postprocess
M diagnostics/diagnostics/ocn/ocn_diags_generator.py
A diagnostics/diagnostics/lnd/lnd_regrid_generator.py
M diagnostics/diagnostics/lnd/lnd_diags_generator.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M diagnostics/setup.py
================================================================================
Originator: aliceb
Date: 2 May 2016
Model: postprocessing
Version: postprocessing_20160502
One-line: Fixes for ice diags set 4 problem in NCL. Update PyAverager to fix
problem using variable timeseries input files and a subset of years. Add first
pass and creating lnd regrid files in parallel in separate directories.
M diag_utils/diag_utils/diagUtilsLib.py
M diag_utils/VERSION
M Machines/machine_postprocess.xml
M Templates/env_postprocess.tmpl
M SVN_EXTERNAL_DIRECTORIES
M cesm_utils/VERSION
M diagnostics/VERSION
M diagnostics/diagnostics/ocn/model_timeseries.py
M diagnostics/diagnostics/lnd/lnd_diags_generator.py
M timeseries/VERSION
================================================================================
Originator: aliceb
Date: 26 April 2016
Model: postprocessing
Version: postprocessing_20160426a
One-line: Update to defaults for obs_data settings in machine_postprocess.xml.
Update to path settings for lnd diags as start of changes needed for regridding
in parallel. Update to cesm_tseries_generator.py to check that history file
streams all end with .nc and print a warning if they do not.
M diag_utils/diag_utils/diagUtilsLib.py
M Machines/machine_postprocess.xml
M diagnostics/diagnostics/lnd/lnd_diags_generator.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M timeseries/timeseries/cesm_tseries_generator.py
================================================================================
Originator: aliceb
Date: 26 April 2016
Model: postprocessing
Version: postprocessing_20160426
One-line: Fix to cesm_tseries_generate.py to handle both stand-alone postprocessing
caseroot and existing caseroot.
M create_postprocess
M timeseries/timeseries/cesm_tseries_generator.py
================================================================================
Originator: aliceb
Date: 25 April 2016
Model: postprocessing
Version: postprocessing_20160425
One-line: Update create_postprocess and supporting files to include pes_per_node and wallclock
attributes in the submission scripts. Update config_ocn_diags to set TAVGDIR and CTNRLTAVGDIR
to include start and stop years. Update timeseries generation to handle standalone postprocessing case.
M Machines/machine_postprocess.xsd
M Machines/machine_postprocess.xml
M Templates/batch_yellowstone.tmpl
M Templates/batch_edison.tmpl
M diagnostics/diagnostics/ocn/Plots/mixed_layer_depth.py
M diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/model_vs_obs.py
M diagnostics/diagnostics/ice/ice_diags_generator.py
M diagnostics/diagnostics/ice/Config/config_diags_ice.xml
M diagnostics/diagnostics/ice/ice_avg_generator.py
M diagnostics/diagnostics/atm/atm_diags_generator.py
M diagnostics/diagnostics/atm/atm_avg_generator.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M create_postprocess
M timeseries/timeseries/cesm_tseries_generator.py
================================================================================
Originator: aliceb
Date: 20 April 2016
Model: postprocessing
Version: postprocessing_20160420
One-line: Update lnd diag web dir paths. Add pp_var_get to emulate xmlquery for pp vars.
M Machines/machine_postprocess.xsd
M Machines/machine_postprocess.xml
M Machines/yellowstone_modules
M Templates/batch_yellowstone.tmpl
A + Tools/create_env_script
D Tools/set_env
A Tools/pp_var_get
D Config/config_postprocess.xsd
M Config/config_postprocess.xml
A Config/config_definition.xsd
M cesm_utils/cesm_utils/cesmEnvLib.py
M diagnostics/diagnostics/ocn/model_vs_control.py
M diagnostics/diagnostics/ocn/model_timeseries.py
M diagnostics/diagnostics/ocn/model_vs_obs.py
M diagnostics/diagnostics/ocn/model_vs_obs_ecosys.py
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/model_vs_obs.py
M diagnostics/diagnostics/lnd/lnd_diags_bc.py
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/lnd_diags_generator.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M create_postprocess
M create_python_env
================================================================================
Originator: aliceb
Date: 14 April 2016
Model: postprocessing
Version: postprocessing_20160414
One-line: update ocn diag to place html plots in a user specified order on the
index.html page. Add timers into the *_diags_generator.py code for all components.
Update the config_definition.xsd for all components.
M diag_utils/diag_utils/diagUtilsLib.py
M diagnostics/diagnostics/ocn/model_vs_control.py
M diagnostics/diagnostics/ocn/model_timeseries.py
M diagnostics/diagnostics/ocn/Plots/ocn_diags_plot_bc.py
M diagnostics/diagnostics/ocn/Plots/regional_area.py
M diagnostics/diagnostics/ocn/Plots/zonal_average_3d_fields.py
M diagnostics/diagnostics/ocn/Plots/western_boundary.py
M diagnostics/diagnostics/ocn/Plots/horizontal_vector_fields.py
M diagnostics/diagnostics/ocn/Plots/bolus_velocity.py
M diagnostics/diagnostics/ocn/Plots/moc_fields.py
M diagnostics/diagnostics/ocn/Plots/basin_averages.py
M diagnostics/diagnostics/ocn/Plots/diffusion_depth.py
M diagnostics/diagnostics/ocn/Plots/temp_salt_depth.py
M diagnostics/diagnostics/ocn/Plots/surface_flux_fields.py
M diagnostics/diagnostics/ocn/Plots/surface_fields.py
M diagnostics/diagnostics/ocn/Plots/passive_tracers_depth.py
M diagnostics/diagnostics/ocn/Plots/eulerian_velocity.py
M diagnostics/diagnostics/ocn/Plots/seasonal_cycle.py
M diagnostics/diagnostics/ocn/Plots/polar_temp_salt.py
M diagnostics/diagnostics/ocn/Plots/mixed_layer_depth.py
M diagnostics/diagnostics/ocn/Plots/equatorial_upperocean.py
M diagnostics/diagnostics/ocn/model_vs_obs.py
M diagnostics/diagnostics/ocn/ocn_diags_generator.py
M diagnostics/diagnostics/ocn/Config/config_definition.xsd
M diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
M diagnostics/diagnostics/ocn/model_vs_obs_ecosys.py
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/model_vs_obs.py
M diagnostics/diagnostics/ice/ice_diags_generator.py
M diagnostics/diagnostics/ice/Config/config_definition.xsd
M diagnostics/diagnostics/ice/Config/config_diags_ice.xml
M diagnostics/diagnostics/atm/Config/config_definition.xsd
M diagnostics/diagnostics/atm/atm_diags_generator.py
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/lnd_diags_generator.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M diagnostics/diagnostics/lnd/Config/config_definition.xsd
================================================================================
Originator: aliceb
Date: 12 April 2016
Model: postprocessing
Version: postprocessing_20160412
One-line: update lnd diags to run in parallel. Also updated the parallel_lnd_diag
trunk and tagged it with changes to the NCL and Perl.
M diagnostics/diagnostics/lnd/lnd_diags_bc.py
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
================================================================================
Originator: aliceb
Date: 04 April 2016
Model: postprocessing
Version: postprocessing_20160404
One-line: fix bug in ice_diags_bc.py pattern matching. Update ice_diag web references
for Bering.png and Husdon.png. Update cpllog_timeseries.log to link to .txt file instead
of .asc file.
M diagnostics/diagnostics/ocn/Plots/cpllog_timeseries.py
M diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
M diagnostics/diagnostics/ice/ice_diags_bc.py
M diagnostics/diagnostics/ice/ice_diags_generator.py
================================================================================
Originator: aliceb
Date: 30 March 2016
Model: postprocessing
Version: postprocessing_20160330
One-line: updates to get ice and lnd diags working - still testing
M diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
M diagnostics/diagnostics/ice/model_vs_model.py
M diagnostics/diagnostics/ice/model_vs_obs.py
M diagnostics/diagnostics/ice/ice_diags_generator.py
M diagnostics/diagnostics/ice/ice_avg_generator.py
M diagnostics/diagnostics/lnd/model_vs_model.py
M diagnostics/diagnostics/lnd/model_vs_obs.py
M cesm_utils/cesm_utils/cesmEnvLib.py
================================================================================
Originator: aliceb
Date: 18 March 2016
Model: postprocessing
Version: postprocessing_20160318
One-line: integrated ice_diag changes, testing is on-going. Update to create
postprocess subdir in existing CASEROOT and created a logs subdir in the postprocess
dir to keep it clean.
M Templates/postprocess.tmpl
M Templates/batch_yellowstone.tmpl
M Templates/env_postprocess.tmpl
M diagnostics/diagnostics/ocn/ocn_diags_generator.py
M diagnostics/diagnostics/ocn/ocn_avg_generator.py
M diagnostics/diagnostics/ice/ice_diags_generator.py
M diagnostics/diagnostics/ice/Config/config_diags_ice.xml
M diagnostics/diagnostics/ice/ice_avg_generator.py
M diagnostics/diagnostics/atm/atm_diags_generator.py
M diagnostics/diagnostics/atm/atm_avg_generator.py
M diagnostics/diagnostics/lnd/lnd_diags_generator.py
M diagnostics/diagnostics/lnd/lnd_avg_generator.py
M create_postprocess
================================================================================
Originator: aliceb
Date: 16 March 2016
Model: postprocessing
Version: postprocessing_20160316
One-line: removed pip install support for mpi4py/2.0.0 now that YS has a
mpi4py/2.0.0 module available (still in test by CISL). Updates to lnd_avg_generato.py
to correctly work with mosart or rtm data.
M Machines/yellowstone_modules
M Config/config_postprocess.xml
M diagnostics/requirements.txt
M diagnostics/diagnostics/ocn/model_vs_obs.py
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M diagnostics/diagnostics/lnd/lnd_avg_generator.py
================================================================================
Originator: aliceb
Date: 14 March 2016
Model: postprocessing
Version: postprocessing_20160314
One-line: added pip install support for mpi4py/2.0.0 which can be removed
once YS has a module setup. Updated ocn model_timeseries to use a sorted list
for the log files to compute transports. Updated lnd diags to get mosart and rtm
working correctly.
M Machines/machine_postprocess.xml
M SVN_EXTERNAL_DIRECTORIES
M diagnostics/requirements.txt
M diagnostics/diagnostics/ocn/model_timeseries.py
M diagnostics/diagnostics/ocn/Plots/poplog_timeseries.py
M diagnostics/diagnostics/ocn/Config/config_diags_ocn.xml
M diagnostics/diagnostics/lnd/Config/config_diags_lnd.xml
M diagnostics/diagnostics/lnd/lnd_avg_generator.py
================================================================================
Originator: aliceb
Date: 11 March 2016
Model: postprocessing
Version: not tagged
One-line: add tool set_env to read XML files and set the environment for debugging.
Update to pyAverager and ASAPpyTools and lnd_diag externals.
A Tools
A Tools/set_env
A Tools/copy_html
M SVN_EXTERNAL_DIRECTORIES