Singularity

BootStrap: docker
From: ubuntu:xenial
 
%setup
    # commands to be executed on host outside container during bootstrap
    
%post
    # commands to be executed inside container during bootstrap
 
    # add universe repo and install some packages
    sed -i '/xenial.*universe/s/^#//g' /etc/apt/sources.list
   
   # locale-gen en_US.UTF-8
    export LC_ALL=C
 
    apt-get -y update
    apt-get -y install vim wget python python-pip
  
    # install pandas 
    pip install --upgrade pip
    pip install  jupyter
    pip install  numpy
    pip install  matplotlib
    
    # clean tmp files
    apt-get autoremove -y
    apt-get clean
   # rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

    # create bind points for MesoFC HPC environment
    mkdir -p /Work
    mkdir -p /Home

%runscript
    # commands to be executed when the container runs
    echo "Starting notebook..."
    echo "Open browser to localhost:8888"
    exec /usr/local/bin/jupyter notebook  --ip='*' --port=8888 --no-browser
 
%test
    # commands to be executed within container at close of bootstrap process