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config.yml
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config.yml
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# location of assembly .fw.gz file
assembly_gz: ./keep/by_id/su92l-4zz18-lj22pmb8h3ty0w8/assembly.00.hg19.fw.gz
# location of assembly .fw.fwi file
assembly_fwi: ./keep/by_id/su92l-4zz18-lj22pmb8h3ty0w8/assembly.00.hg19.fw.fwi
# location of keep collection with sglf.gz files
sglf: ./keep/by_id/su92l-4zz18-fkbdz2w6b25ayj3
# location of tile info array
# for complete tile set
tile_info: ./keep/by_id/su92l-4zz18-b8rs5x7t6gry16k/all-info.npy
# only for high quality tile set from PGP
#tile_info: ./keep/by_id/su92l-4zz18-xmmmg0qn0wuaxkl/hiq-pip-info
# location of gzipped reference vcf file. Needed for getRsids.py
ref_vcf: ./keep/by_id/su92l-4zz18-v96bt8gwbsini81/GRCh37p13.vcf.gz
features:
# requires sglf
- diff_indices
# requires assembly_fwi
- location
# requires assembly_gz
- base_pair_locations
# requires sglf
- variant_diffs