seqlib -- a python library to facilitate high-throughput sequencing data analysis

Available libraries

align -- sequence alignment
helper -- help functions for programming
interval -- deal with intervals
ngs -- deal with NGS data
parse -- parse reference files
path -- path relevant functions
seq -- convert sequences
sam -- SAM/BAM file relevant functions

Available scripts

extract_junc.py -- extract junctions from BAM files
extract_region.py -- extract genomic regions
fetch_geoinfo.py -- extract GEO information

License

Copyright (C) Xiao-Ou Zhang and contributors. See the LICENSE file for license rights and limitations (MIT)